AutismKB 2.0

Annotation Detail for TTC38


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Basic Information Top
Gene Symbol:TTC38 ( FLJ20699 )
Gene Full Name: tetratricopeptide repeat domain 38
Band: 22q13.31
Quick LinksEntrez ID:55020; OMIM: NA; Uniprot ID:TTC38_HUMAN; ENSEMBL ID: ENSG00000075234; HGNC ID: 26082
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus27 / 56401247
neonate3 / 3109796
infant0 / 236200 
juvenile2 / 5555635
adult111 / 193912157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma7 / 8282384
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor6 / 26384522
glioma3 / 10688328
head and neck tumor5 / 13630236
kidney tumor2 / 6895929
leukemia6 / 9584262
liver tumor5 / 9635951
lung tumor8 / 10312777
lymphoma6 / 7175583
non-neoplasia2 / 9725020
normal178 / 336030752
ovarian tumor5 / 7668265
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS25 / 125680198
prostate cancer14 / 102680136
retinoblastoma7 / 46356151
skin tumor2 / 12494916
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites2 / 4001549
bladder1 / 2975733
blood6 / 12347848
bone3 / 7165541
bone marrow4 / 4880181
brain23 / 110098920
cervix2 / 4817141
connective tissue4 / 14925526
ear1 / 1621261
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye10 / 21105447
heart1 / 8962611
intestine25 / 234472106
kidney31 / 211777146
larynx2 / 2414582
liver14 / 20774367
lung19 / 33697456
lymph5 / 44270112
lymph node1 / 9161010
mammary gland6 / 15327139
mouth3 / 6705244
muscle6 / 10771555
nerve0 / 157680 
ovary8 / 10205178
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta9 / 28082532
prostate23 / 189345121
salivary gland3 / 20155148
skin6 / 21057428
spleen3 / 5395255
stomach4 / 9661941
testis14 / 33044242
thymus2 / 8113124
thyroid2 / 4747342
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord1 / 1368073
uterus17 / 23287872
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218272_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.85
Adipocyte6
AdrenalCortex6.4
Adrenalgland5.1
Amygdala5.9
Appendix5.9
AtrioventricularNode3.7
BDCA4+_DentriticCells6.5
Bonemarrow5.8
BronchialEpithelialCells5.7
CD105+_Endothelial6.1
CD14+_Monocytes11.95
CD19+_BCells(neg._sel.)6.15
CD33+_Myeloid7.55
CD34+7.5
CD4+_Tcells6.4
CD56+_NKCells790.65
CD71+_EarlyErythroid5.65
CD8+_Tcells9.6
CardiacMyocytes7.65
Caudatenucleus5.2
Cerebellum4.75
CerebellumPeduncles6.65
CiliaryGanglion3.05
CingulateCortex5.9
Colorectaladenocarcinoma5.85
DorsalRootGanglion3.15
FetalThyroid5.7
Fetalbrain5.65
Fetalliver5.25
Fetallung10.15
GlobusPallidus4.35
Heart12.35
Hypothalamus6.4
Kidney64.65
Leukemia_chronicMyelogenousK-5625.3
Leukemia_promyelocytic-HL-604.15
Leukemialymphoblastic(MOLT-4)4.55
Liver207.35
Lung6.45
Lymphnode5.05
Lymphoma_burkitts(Daudi)7.45
Lymphoma_burkitts(Raji)8.3
MedullaOblongata5.25
OccipitalLobe4.4
OlfactoryBulb4.65
Ovary5.2
Pancreas6.85
PancreaticIslet14.7
ParietalLobe6.15
Pituitary6.85
Placenta4.9
Pons5.6
PrefrontalCortex7.2
Prostate10.3
Salivarygland4.75
SkeletalMuscle7.3
Skin4.5
SmoothMuscle6.65
Spinalcord6.25
SubthalamicNucleus5.35
SuperiorCervicalGanglion6.6
TemporalLobe5.3
Testis5
TestisGermCell4.7
TestisIntersitial4.85
TestisLeydigCell5.2
TestisSeminiferousTubule5.05
Thalamus5.9
Thymus4.5
Thyroid7.4
Tongue5.75
Tonsil5.7
Trachea4.95
TrigeminalGanglion5.9
Uterus4.75
UterusCorpus5.3
WholeBlood7.95
Wholebrain4.8
colon5.95
pineal_day7.32
pineal_night7.18
retina7.125
small_intestine15.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P156388
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.01 ± 0.94
Basal Forebrain1.75 ± 0.53
Basal Part of Pons1.81 ± 0.73
Cerebellar Cortex2.17 ± 0.59
Cerebellar Nuclei2.12 ± 0.71
Claustrum2.3 ± 0.6
Epithalamus2.18 ± 0.81
Frontal Lobe1.88 ± 0.74
Globus Pallidus2.51 ± 0.77
Hypothalamus2.14 ± 0.54
Insula1.88 ± 0.77
Limbic Lobe1.74 ± 0.65
Mesencephalon2.09 ± 0.74
Myelencephalon2.04 ± 0.63
Occipital Lobe1.98 ± 0.64
Parietal Lobe1.93 ± 0.68
Pontine Tegmentum2.05 ± 0.73
Striatum2.35 ± 0.76
Subthalamus2.02 ± 0.75
Temporal Lobe1.89 ± 0.7
Thalamus2.18 ± 0.69
White Matter2.24 ± 0.25
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000204 20 127 146 ACELWEQILQDHPTDMLALK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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