AutismKB 2.0

Annotation Detail for PID1


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Basic Information Top
Gene Symbol:PID1 ( FLJ20701,NYGGF4,PCLI1 )
Gene Full Name: phosphotyrosine interaction domain containing 1
Band: 2q36.3
Quick LinksEntrez ID:55022; OMIM: 612930; Uniprot ID:PCLI1_HUMAN; ENSEMBL ID: ENSG00000153823; HGNC ID: 26084
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus57 / 564012101
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult47 / 193912124
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma5 / 10688346
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal137 / 336030740
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain58 / 110098952
cervix0 / 481710 
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye6 / 21105428
heart8 / 8962689
intestine8 / 23447234
kidney4 / 21177718
larynx1 / 2414541
liver5 / 20774324
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta16 / 28082556
prostate4 / 18934521
salivary gland0 / 201550 
skin1 / 2105744
spleen3 / 5395255
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219093_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.5
Adipocyte7.8
AdrenalCortex9.4
Adrenalgland31.9
Amygdala78.55
Appendix10.15
AtrioventricularNode6
BDCA4+_DentriticCells8.4
Bonemarrow8.05
BronchialEpithelialCells7.15
CD105+_Endothelial7.5
CD14+_Monocytes96.75
CD19+_BCells(neg._sel.)7.45
CD33+_Myeloid15.1
CD34+8.4
CD4+_Tcells7.1
CD56+_NKCells8
CD71+_EarlyErythroid6.85
CD8+_Tcells6.35
CardiacMyocytes21.2
Caudatenucleus18.9
Cerebellum6
CerebellumPeduncles8.45
CiliaryGanglion7.35
CingulateCortex21.2
Colorectaladenocarcinoma7.3
DorsalRootGanglion7.15
FetalThyroid9.6
Fetalbrain130.15
Fetalliver9.9
Fetallung47.6
GlobusPallidus5.9
Heart11.15
Hypothalamus44.75
Kidney6.3
Leukemia_chronicMyelogenousK-5626.45
Leukemia_promyelocytic-HL-606.2
Leukemialymphoblastic(MOLT-4)5.5
Liver91.45
Lung71.55
Lymphnode12.85
Lymphoma_burkitts(Daudi)9.4
Lymphoma_burkitts(Raji)10.9
MedullaOblongata7.15
OccipitalLobe8.55
OlfactoryBulb7.2
Ovary6
Pancreas5.95
PancreaticIslet8.35
ParietalLobe8.7
Pituitary9.9
Placenta63.95
Pons7.35
PrefrontalCortex13.95
Prostate13.9
Salivarygland6.2
SkeletalMuscle8.8
Skin7.4
SmoothMuscle465.1
Spinalcord8.45
SubthalamicNucleus7.6
SuperiorCervicalGanglion9.35
TemporalLobe7.4
Testis6.55
TestisGermCell6.35
TestisIntersitial6.45
TestisLeydigCell7.4
TestisSeminiferousTubule6.2
Thalamus17.15
Thymus6.05
Thyroid13.9
Tongue8.45
Tonsil7
Trachea11.2
TrigeminalGanglion8.8
Uterus56.45
UterusCorpus7.6
WholeBlood35
Wholebrain66
colon48.7
pineal_day9.08
pineal_night9.14
retina41.025
small_intestine11.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P21485
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.85 ± 0.41
Basal Forebrain7.83 ± 0.25
Basal Part of Pons7.98 ± 0.48
Cerebellar Cortex7.24 ± 0.23
Cerebellar Nuclei7.63 ± 0.38
Claustrum7.32 ± 0.87
Epithalamus7.26 ± 0.55
Frontal Lobe8.08 ± 0.47
Globus Pallidus8.09 ± 0.58
Hypothalamus8.31 ± 0.36
Insula8.49 ± 0.41
Limbic Lobe7.86 ± 0.84
Mesencephalon8.09 ± 0.67
Myelencephalon7.87 ± 0.63
Occipital Lobe7.04 ± 0.74
Parietal Lobe7.78 ± 0.57
Pontine Tegmentum7.79 ± 0.52
Striatum7.6 ± 0.74
Subthalamus7.82 ± 0.28
Temporal Lobe8.31 ± 0.55
Thalamus7.85 ± 0.4
White Matter5.9 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
5033414K04RikCBCerebellum12.35
18.25
5033414K04RikCTXCerebral cortex13.35
10.55
5033414K04RikHIPHippocampal region11.39
13.15
5033414K04RikHPFHippocampal formation13.51
13.5
5033414K04RikHYHypothalamus4.88
3.86
5033414K04RikLSXLateral septal complex5.89
5.21
5033414K04RikMBMidbrain7.29
7.59
5033414K04RikMYMedulla16.5
18.79
5033414K04RikOLFOlfactory bulb49.73
50.49
5033414K04RikPPons11.72
13.07
5033414K04RikPALPallidum3.4
3.13
5033414K04RikRHPRetrohippocampal region17.39
14.49
5033414K04RiksAMYStriatum-like amygdalar nuclei7.82
5.86
5033414K04RikSTRStriatum5.01
4.18
5033414K04RikSTRdStriatum dorsal region3.9
3.51
5033414K04RikSTRvStriatum ventral region6.24
4.56
5033414K04RikTHThalamus5.23
4.88
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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