AutismKB 2.0

Annotation Detail for BANK1


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Basic Information Top
Gene Symbol:BANK1 ( BANK,FLJ20706,FLJ34204 )
Gene Full Name: B-cell scaffold protein with ankyrin repeats 1
Band: 4q24
Quick LinksEntrez ID:55024; OMIM: 610292; Uniprot ID:BANK1_HUMAN; ENSEMBL ID: ENSG00000153064; HGNC ID: 18233
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult18 / 19391219
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia6 / 9584262
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal59 / 336030717
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood6 / 12347848
bone0 / 716550 
bone marrow2 / 4880140
brain5 / 11009894
cervix0 / 481710 
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node21 / 91610229
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx4 / 4132896
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen11 / 53952203
stomach0 / 966190 
testis6 / 33044218
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219667_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.15
Adipocyte6.35
AdrenalCortex7.3
Adrenalgland5.85
Amygdala6.15
Appendix7.1
AtrioventricularNode5.7
BDCA4+_DentriticCells72.2
Bonemarrow6.8
BronchialEpithelialCells5.9
CD105+_Endothelial10.1
CD14+_Monocytes6.6
CD19+_BCells(neg._sel.)1567.3
CD33+_Myeloid7.65
CD34+25.3
CD4+_Tcells6.45
CD56+_NKCells9.95
CD71+_EarlyErythroid6.05
CD8+_Tcells5.75
CardiacMyocytes9.55
Caudatenucleus5.7
Cerebellum5.15
CerebellumPeduncles7.4
CiliaryGanglion5.65
CingulateCortex6.6
Colorectaladenocarcinoma6.2
DorsalRootGanglion5.35
FetalThyroid6.2
Fetalbrain6.05
Fetalliver5.7
Fetallung4.95
GlobusPallidus4.9
Heart9.05
Hypothalamus6.45
Kidney5.5
Leukemia_chronicMyelogenousK-5625.7
Leukemia_promyelocytic-HL-607.4
Leukemialymphoblastic(MOLT-4)4.8
Liver9
Lung6.8
Lymphnode180.45
Lymphoma_burkitts(Daudi)20.05
Lymphoma_burkitts(Raji)28.75
MedullaOblongata5.85
OccipitalLobe5.65
OlfactoryBulb4.95
Ovary4.45
Pancreas5.2
PancreaticIslet6.7
ParietalLobe6.95
Pituitary7.2
Placenta6.15
Pons6.45
PrefrontalCortex7.35
Prostate7.2
Salivarygland7.5
SkeletalMuscle8.6
Skin6.6
SmoothMuscle7.1
Spinalcord6.75
SubthalamicNucleus6.15
SuperiorCervicalGanglion8.45
TemporalLobe7.2
Testis5.4
TestisGermCell5
TestisIntersitial5.35
TestisLeydigCell6.5
TestisSeminiferousTubule5.4
Thalamus6.55
Thymus4.75
Thyroid17.95
Tongue6.6
Tonsil168.2
Trachea5.55
TrigeminalGanglion7.2
Uterus5
UterusCorpus6.7
WholeBlood7.7
Wholebrain5.05
colon6.3
pineal_day7.94
pineal_night7.62
retina7.725
small_intestine6.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P10232
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.31 ± 0.92
Basal Forebrain2.59 ± 0.37
Basal Part of Pons4.37 ± 0.44
Cerebellar Cortex4.08 ± 0.44
Cerebellar Nuclei3.25 ± 0.74
Claustrum3.16 ± 0.7
Epithalamus4.39 ± 0.8
Frontal Lobe3.33 ± 0.72
Globus Pallidus2.1 ± 0.73
Hypothalamus2.94 ± 0.99
Insula2.95 ± 0.88
Limbic Lobe2.94 ± 0.66
Mesencephalon3.2 ± 0.76
Myelencephalon3.27 ± 0.8
Occipital Lobe2.88 ± 0.87
Parietal Lobe3.15 ± 0.78
Pontine Tegmentum3.01 ± 0.81
Striatum3.47 ± 0.95
Subthalamus3.11 ± 0.7
Temporal Lobe3.27 ± 0.76
Thalamus3.43 ± 0.66
White Matter2.05 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Bank1CBCerebellum12.21
12.72
Bank1CTXCerebral cortex34.23
24.7
Bank1HIPHippocampal region17.41
18.95
Bank1HPFHippocampal formation15.47
14.86
Bank1HYHypothalamus24.5
18.7
Bank1LSXLateral septal complex32.34
22.67
Bank1MBMidbrain12.83
11.82
Bank1MYMedulla15.39
16.14
Bank1OLFOlfactory bulb32.24
23.84
Bank1PPons21.12
22.14
Bank1PALPallidum15.25
12.32
Bank1RHPRetrohippocampal region11.84
8.76
Bank1sAMYStriatum-like amygdalar nuclei20.56
13.4
Bank1STRStriatum21.45
14.45
Bank1STRdStriatum dorsal region17.45
11.5
Bank1STRvStriatum ventral region31.32
20.74
Bank1THThalamus24.36
19.77
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
BANK1_HUMAN_110 10 110 119 SVVTLLCGVK PRIDE
BANK1_HUMAN_120 15 120 134 SSDQLYELLNISQSR PRIDE
BANK1_HUMAN_219 17 219 235 DEVIGDTVEVEFTSSNK PRIDE
BANK1_HUMAN_253 20 253 272 ALEFPAGSVHVNVYCDGIVK PRIDE
BANK1_HUMAN_337 16 337 352 YTHFKELPTLLHCAAK PRIDE
BANK1_HUMAN_661 10 661 670 IESPAFSTLR PRIDE
BANK1_HUMAN_709 10 709 718 SGLEMIQQEK PRIDE
BANK1_HUMAN_740 10 740 749 LTIVHHPGGK PRIDE
BANK1_HUMAN_750 8 750 757 ETAHNENK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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