AutismKB 2.0

Annotation Detail for SUSD4


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Basic Information Top
Gene Symbol:SUSD4 ( FLJ10052,PRO222 )
Gene Full Name: sushi domain containing 4
Band: 1q41
Quick LinksEntrez ID:55061; OMIM: NA; Uniprot ID:SUSD4_HUMAN; ENSEMBL ID: ENSG00000143502; HGNC ID: 25470
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus15 / 56401226
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult30 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma2 / 10688318
head and neck tumor9 / 13630266
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal101 / 336030730
ovarian tumor4 / 7668252
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain76 / 110098969
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine1 / 2344724
kidney11 / 21177751
larynx0 / 241450 
liver0 / 2077430 
lung18 / 33697453
lymph0 / 442700 
lymph node1 / 9161010
mammary gland7 / 15327145
mouth9 / 67052134
muscle0 / 1077150 
nerve0 / 157680 
ovary5 / 10205148
pancreas14 / 21481265
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis4 / 33044212
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219389_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.1
Adipocyte7.4
AdrenalCortex8.7
Adrenalgland6.8
Amygdala44.75
Appendix8.65
AtrioventricularNode6.45
BDCA4+_DentriticCells5.85
Bonemarrow11.45
BronchialEpithelialCells7.15
CD105+_Endothelial7.35
CD14+_Monocytes6.85
CD19+_BCells(neg._sel.)6.8
CD33+_Myeloid9.45
CD34+8.55
CD4+_Tcells9.65
CD56+_NKCells7.5
CD71+_EarlyErythroid7.35
CD8+_Tcells6.5
CardiacMyocytes10.7
Caudatenucleus21.25
Cerebellum18.9
CerebellumPeduncles9.1
CiliaryGanglion6.05
CingulateCortex18.85
Colorectaladenocarcinoma7.95
DorsalRootGanglion6.5
FetalThyroid7.55
Fetalbrain7.6
Fetalliver8.8
Fetallung6.45
GlobusPallidus8.1
Heart10.75
Hypothalamus28.65
Kidney7.55
Leukemia_chronicMyelogenousK-5627.15
Leukemia_promyelocytic-HL-606.55
Leukemialymphoblastic(MOLT-4)6.35
Liver10.8
Lung8.1
Lymphnode6.5
Lymphoma_burkitts(Daudi)10.1
Lymphoma_burkitts(Raji)11.5
MedullaOblongata14.3
OccipitalLobe9.75
OlfactoryBulb6.05
Ovary15.3
Pancreas6.35
PancreaticIslet8.35
ParietalLobe17.35
Pituitary15.45
Placenta7.4
Pons19.35
PrefrontalCortex25.15
Prostate9
Salivarygland6.45
SkeletalMuscle13
Skin6.4
SmoothMuscle8.2
Spinalcord8.25
SubthalamicNucleus12.95
SuperiorCervicalGanglion11.5
TemporalLobe25.65
Testis6.65
TestisGermCell6.15
TestisIntersitial6.6
TestisLeydigCell7.95
TestisSeminiferousTubule7.35
Thalamus34.25
Thymus5.9
Thyroid9.05
Tongue9.9
Tonsil7.75
Trachea6.55
TrigeminalGanglion8.85
Uterus6.15
UterusCorpus7.45
WholeBlood8.1
Wholebrain15.75
colon7.8
pineal_day95.74
pineal_night109.7
retina9.375
small_intestine7.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_334_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.17 ± 0.67
Basal Forebrain5.56 ± 0.3
Basal Part of Pons5.47 ± 0.27
Cerebellar Cortex5.41 ± 0.33
Cerebellar Nuclei5.03 ± 0.61
Claustrum5.75 ± 0.62
Epithalamus4.66 ± 0.76
Frontal Lobe5.9 ± 0.62
Globus Pallidus4.54 ± 0.98
Hypothalamus5.56 ± 0.46
Insula5.49 ± 0.47
Limbic Lobe6.56 ± 0.64
Mesencephalon5.46 ± 0.73
Myelencephalon5.69 ± 0.68
Occipital Lobe5.81 ± 0.68
Parietal Lobe5.97 ± 0.55
Pontine Tegmentum5.92 ± 0.56
Striatum6.61 ± 0.67
Subthalamus4.94 ± 0.42
Temporal Lobe5.68 ± 0.5
Thalamus5.83 ± 0.59
White Matter3.09 ± 0.86
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Susd4CBCerebellum43.56
100
Susd4CTXCerebral cortex100
100
Susd4HIPHippocampal region100
100
Susd4HPFHippocampal formation100
100
Susd4HYHypothalamus71.17
68.82
Susd4LSXLateral septal complex100
100
Susd4MBMidbrain74.05
76.54
Susd4MYMedulla69.56
81.02
Susd4OLFOlfactory bulb87.79
96.16
Susd4PPons60.96
55.61
Susd4PALPallidum70.71
65.95
Susd4RHPRetrohippocampal region94.01
98.01
Susd4sAMYStriatum-like amygdalar nuclei79.33
78
Susd4STRStriatum64.94
46.57
Susd4STRdStriatum dorsal region47.73
25.86
Susd4STRvStriatum ventral region75.32
67.79
Susd4THThalamus71.64
69.61
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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