AutismKB 2.0

Annotation Detail for ATG2B


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:ATG2B ( C14orf103,FLJ10242 )
Gene Full Name: ATG2 autophagy related 2 homolog B (S. cerevisiae)
Band: 14q32.2
Quick LinksEntrez ID:55102; OMIM: NA; Uniprot ID:ATG2B_HUMAN; ENSEMBL ID: ENSG00000066739; HGNC ID: 20187
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus36 / 56401263
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult71 / 193912136
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor5 / 9635951
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal142 / 336030742
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor5 / 12494940
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone3 / 7165541
bone marrow1 / 4880120
brain34 / 110098930
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye13 / 21105461
heart0 / 896260 
intestine11 / 23447246
kidney10 / 21177747
larynx1 / 2414541
liver9 / 20774343
lung6 / 33697417
lymph0 / 442700 
lymph node3 / 9161032
mammary gland4 / 15327126
mouth3 / 6705244
muscle4 / 10771537
nerve0 / 157680 
ovary2 / 10205119
pancreas9 / 21481241
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta3 / 28082510
prostate3 / 18934515
salivary gland0 / 201550 
skin11 / 21057452
spleen0 / 539520 
stomach3 / 9661931
testis15 / 33044245
thymus6 / 8113173
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219164_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.7
Adipocyte8.55
AdrenalCortex9.2
Adrenalgland7.3
Amygdala10.35
Appendix10.35
AtrioventricularNode11.05
BDCA4+_DentriticCells8.95
Bonemarrow9.3
BronchialEpithelialCells7.5
CD105+_Endothelial7.85
CD14+_Monocytes8.55
CD19+_BCells(neg._sel.)10
CD33+_Myeloid14.55
CD34+10.1
CD4+_Tcells13.25
CD56+_NKCells12.8
CD71+_EarlyErythroid12.55
CD8+_Tcells10.4
CardiacMyocytes11
Caudatenucleus7.3
Cerebellum6.55
CerebellumPeduncles10.7
CiliaryGanglion6.8
CingulateCortex9.65
Colorectaladenocarcinoma8.15
DorsalRootGanglion7.85
FetalThyroid7.95
Fetalbrain8
Fetalliver15.95
Fetallung9.85
GlobusPallidus6.7
Heart11.5
Hypothalamus8.5
Kidney6.9
Leukemia_chronicMyelogenousK-5627.35
Leukemia_promyelocytic-HL-607.3
Leukemialymphoblastic(MOLT-4)7.15
Liver11.05
Lung8.5
Lymphnode12.2
Lymphoma_burkitts(Daudi)11.1
Lymphoma_burkitts(Raji)11.85
MedullaOblongata7.65
OccipitalLobe7.75
OlfactoryBulb6.35
Ovary6.25
Pancreas6.7
PancreaticIslet10.1
ParietalLobe9.45
Pituitary16.05
Placenta7.85
Pons8.2
PrefrontalCortex14.9
Prostate9.85
Salivarygland7.8
SkeletalMuscle11.6
Skin6.85
SmoothMuscle8.95
Spinalcord8.5
SubthalamicNucleus8.1
SuperiorCervicalGanglion13.45
TemporalLobe7.65
Testis7.05
TestisGermCell6.5
TestisIntersitial7.05
TestisLeydigCell8.45
TestisSeminiferousTubule6.9
Thalamus8.7
Thymus5.8
Thyroid10.65
Tongue10.3
Tonsil8.4
Trachea6.6
TrigeminalGanglion10.6
Uterus10.9
UterusCorpus7.6
WholeBlood8.55
Wholebrain6.05
colon8.3
pineal_day10.42
pineal_night12.5
retina9.725
small_intestine7.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P332941
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.52 ± 0.6
Basal Forebrain4.55 ± 0.4
Basal Part of Pons4.77 ± 0.52
Cerebellar Cortex4.87 ± 0.15
Cerebellar Nuclei4.42 ± 0.54
Claustrum4.2 ± 0.73
Epithalamus4.51 ± 0.34
Frontal Lobe4.56 ± 0.47
Globus Pallidus3.88 ± 0.43
Hypothalamus4.25 ± 0.38
Insula4.49 ± 0.54
Limbic Lobe4.55 ± 0.38
Mesencephalon4.47 ± 0.51
Myelencephalon4.45 ± 0.49
Occipital Lobe4.57 ± 0.42
Parietal Lobe4.52 ± 0.46
Pontine Tegmentum4.5 ± 0.47
Striatum4.2 ± 0.44
Subthalamus4.86 ± 0.24
Temporal Lobe4.53 ± 0.43
Thalamus4.35 ± 0.59
White Matter5.13 ± 0.09
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2410024A21RikCBCerebellum35
71.87
2410024A21RikCTXCerebral cortex87.75
72.81
2410024A21RikHIPHippocampal region51.04
82.83
2410024A21RikHPFHippocampal formation60.23
76.37
2410024A21RikHYHypothalamus40.81
36.06
2410024A21RikLSXLateral septal complex35.88
28.32
2410024A21RikMBMidbrain47.69
46.46
2410024A21RikMYMedulla44.43
51.46
2410024A21RikOLFOlfactory bulb67.25
60.96
2410024A21RikPPons42.2
49.05
2410024A21RikPALPallidum34.89
34.17
2410024A21RikRHPRetrohippocampal region75.16
70.61
2410024A21RiksAMYStriatum-like amygdalar nuclei38.78
30.94
2410024A21RikSTRStriatum30.08
23.52
2410024A21RikSTRdStriatum dorsal region25.21
19.84
2410024A21RikSTRvStriatum ventral region39.7
29.2
2410024A21RikTHThalamus36.94
34.03
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved