Annotation Detail for RALGPS2
Basic Information Top
| Gene Symbol: | RALGPS2 ( FLJ10244,FLJ25604,KIAA0351,dJ595C2.1 ) |
|---|---|
| Gene Full Name: | Ral GEF with PH domain and SH3 binding motif 2 |
| Band: | 1q25.2 |
| Quick Links | Entrez ID:55103; OMIM: NA; Uniprot ID:RGPS2_HUMAN; ENSEMBL ID: ENSG00000116191; HGNC ID: 30279 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.632485
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 0 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 3 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P97517
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.72 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.18 ± 0.18 | |
| Basal Part of Pons | 6.84 ± 0.53 | |
| Cerebellar Cortex | 7.25 ± 0.34 | |
| Cerebellar Nuclei | 6.78 ± 0.41 | |
| Claustrum | 7.77 ± 0.61 | |
| Epithalamus | 7.6 ± 0.75 | |
| Frontal Lobe | 7.15 ± 0.5 | |
| Globus Pallidus | 6.69 ± 0.33 | |
| Hypothalamus | 7.18 ± 0.35 | |
| Insula | 7.37 ± 0.27 | |
| Limbic Lobe | 7.86 ± 0.53 | |
| Mesencephalon | 7.27 ± 0.51 | |
| Myelencephalon | 7.27 ± 0.49 | |
| Occipital Lobe | 7.51 ± 0.54 | |
| Parietal Lobe | 7.17 ± 0.53 | |
| Pontine Tegmentum | 7.33 ± 0.52 | |
| Striatum | 8.21 ± 0.47 | |
| Subthalamus | 6.63 ± 0.12 | |
| Temporal Lobe | 7.29 ± 0.38 | |
| Thalamus | 6.91 ± 0.29 | |
| White Matter | 5.67 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ralgps2 | CB | Cerebellum | 1.33 |  |
| 1.59 | | |||
| Ralgps2 | CTX | Cerebral cortex | 4.23 | |
| 3.42 | | |||
| Ralgps2 | HIP | Hippocampal region | 24.54 | |
| 30.16 | | |||
| Ralgps2 | HPF | Hippocampal formation | 20.06 | |
| 22.66 | | |||
| Ralgps2 | HY | Hypothalamus | 10.1 | |
| 10.65 | | |||
| Ralgps2 | LSX | Lateral septal complex | 2.43 | |
| 1.72 | | |||
| Ralgps2 | MB | Midbrain | 1.54 | |
| 1.63 | | |||
| Ralgps2 | MY | Medulla | 2.2 | |
| 3.42 | | |||
| Ralgps2 | OLF | Olfactory bulb | 23.46 | |
| 20.86 | | |||
| Ralgps2 | P | Pons | 3.72 | |
| 6.09 | | |||
| Ralgps2 | PAL | Pallidum | 4.42 | |
| 4.05 | | |||
| Ralgps2 | RHP | Retrohippocampal region | 9.18 | |
| 7.97 | | |||
| Ralgps2 | sAMY | Striatum-like amygdalar nuclei | 4.43 | |
| 4.14 | | |||
| Ralgps2 | STR | Striatum | 3.67 | |
| 3.31 | | |||
| Ralgps2 | STRd | Striatum dorsal region | 2.42 | |
| 1.92 | | |||
| Ralgps2 | STRv | Striatum ventral region | 7.17 | |
| 6.93 | | |||
| Ralgps2 | TH | Thalamus | 1.84 | |
| 1.65 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00502002 | 15 | 369 | 383 | HLLDDSVMEPHAPSR | Peptide Atlas |