AutismKB 2.0

Annotation Detail for AGGF1


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Basic Information Top
Gene Symbol:AGGF1 ( FLJ10283,GPATC7,GPATCH7,HSU84971,HUS84971,VG5Q )
Gene Full Name: angiogenic factor with G patch and FHA domains 1
Band: 5q13.3
Quick LinksEntrez ID:55109; OMIM: 608464; Uniprot ID:AGGF1_HUMAN; ENSEMBL ID: ENSG00000164252; HGNC ID: 24684
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst4 / 6231964
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult43 / 193912122
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma12 / 82823144
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor4 / 26384515
glioma4 / 10688337
head and neck tumor3 / 13630222
kidney tumor3 / 6895943
leukemia3 / 9584231
liver tumor3 / 9635931
lung tumor4 / 10312738
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal107 / 336030731
ovarian tumor1 / 7668213
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood3 / 12347824
bone9 / 71655125
bone marrow1 / 4880120
brain35 / 110098931
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye7 / 21105433
heart2 / 8962622
intestine0 / 2344720 
kidney8 / 21177737
larynx1 / 2414541
liver5 / 20774324
lung10 / 33697429
lymph0 / 442700 
lymph node10 / 91610109
mammary gland4 / 15327126
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary1 / 1020519
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate3 / 18934515
salivary gland0 / 201550 
skin3 / 21057414
spleen2 / 5395237
stomach5 / 9661951
testis14 / 33044242
thymus0 / 811310 
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208042_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.1
Adipocyte9
AdrenalCortex9.35
Adrenalgland7.6
Amygdala9.5
Appendix12.25
AtrioventricularNode7.5
BDCA4+_DentriticCells10.25
Bonemarrow9.2
BronchialEpithelialCells9.25
CD105+_Endothelial9.45
CD14+_Monocytes11.75
CD19+_BCells(neg._sel.)10
CD33+_Myeloid11.75
CD34+15.95
CD4+_Tcells9.65
CD56+_NKCells12.25
CD71+_EarlyErythroid8.55
CD8+_Tcells8.75
CardiacMyocytes11.45
Caudatenucleus8
Cerebellum7.35
CerebellumPeduncles10.8
CiliaryGanglion6.5
CingulateCortex9.3
Colorectaladenocarcinoma8.7
DorsalRootGanglion7.35
FetalThyroid10.7
Fetalbrain8.5
Fetalliver8.2
Fetallung7.2
GlobusPallidus6.85
Heart12.1
Hypothalamus9.55
Kidney7.6
Leukemia_chronicMyelogenousK-5627.75
Leukemia_promyelocytic-HL-607.6
Leukemialymphoblastic(MOLT-4)7.05
Liver15.75
Lung9.9
Lymphnode7.9
Lymphoma_burkitts(Daudi)11.35
Lymphoma_burkitts(Raji)12.75
MedullaOblongata8.1
OccipitalLobe8.15
OlfactoryBulb7.1
Ovary6.35
Pancreas7.25
PancreaticIslet9.75
ParietalLobe10.25
Pituitary10.35
Placenta8.85
Pons8.7
PrefrontalCortex10.9
Prostate11.5
Salivarygland7.35
SkeletalMuscle16.95
Skin8.55
SmoothMuscle10.3
Spinalcord9.65
SubthalamicNucleus8.35
SuperiorCervicalGanglion15.6
TemporalLobe9.25
Testis7.55
TestisGermCell7.2
TestisIntersitial7.75
TestisLeydigCell9.05
TestisSeminiferousTubule7.75
Thalamus9.05
Thymus7.1
Thyroid11.4
Tongue8.95
Tonsil8.85
Trachea7.45
TrigeminalGanglion9.4
Uterus7.3
UterusCorpus8.45
WholeBlood9.55
Wholebrain8.05
colon9.15
pineal_day11.64
pineal_night16.52
retina10.825
small_intestine8.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P41970
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.31 ± 0.22
Basal Forebrain8.33 ± 0.12
Basal Part of Pons8.33 ± 0.15
Cerebellar Cortex8.34 ± 0.17
Cerebellar Nuclei8.31 ± 0.25
Claustrum8.22 ± 0.16
Epithalamus8.47 ± 0.19
Frontal Lobe8.37 ± 0.22
Globus Pallidus8.42 ± 0.18
Hypothalamus8.37 ± 0.15
Insula8.36 ± 0.19
Limbic Lobe8.35 ± 0.21
Mesencephalon8.4 ± 0.24
Myelencephalon8.29 ± 0.23
Occipital Lobe8.32 ± 0.22
Parietal Lobe8.42 ± 0.2
Pontine Tegmentum8.3 ± 0.18
Striatum8.1 ± 0.25
Subthalamus8.45 ± 0.16
Temporal Lobe8.39 ± 0.18
Thalamus8.29 ± 0.2
White Matter8.53 ± 0.04
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Aggf1CBCerebellum3.26
3.5
Aggf1CTXCerebral cortex4.49
1.67
Aggf1HIPHippocampal region3.16
2.44
Aggf1HPFHippocampal formation3.09
2.11
Aggf1HYHypothalamus0.46
0.42
Aggf1LSXLateral septal complex0.38
0.46
Aggf1MBMidbrain1.38
0.81
Aggf1MYMedulla2.28
1.56
Aggf1OLFOlfactory bulb1.81
1.03
Aggf1PPons1.36
0.84
Aggf1PALPallidum0.45
0.29
Aggf1RHPRetrohippocampal region3.08
1.71
Aggf1sAMYStriatum-like amygdalar nuclei0.42
0.63
Aggf1STRStriatum0.57
0.46
Aggf1STRdStriatum dorsal region0.65
0.52
Aggf1STRvStriatum ventral region0.48
0.24
Aggf1THThalamus0.93
0.52
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00505399 15 141 155 DHLQVENDAYPGTDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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