AutismKB 2.0

Annotation Detail for WDR60


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Basic Information Top
Gene Symbol:WDR60 ( FLJ10300,FLJ23575 )
Gene Full Name: WD repeat domain 60
Band: 7q36.3
Quick LinksEntrez ID:55112; OMIM: NA; Uniprot ID:WDR60_HUMAN; ENSEMBL ID: ENSG00000126870; HGNC ID: 21862
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult37 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor3 / 26384511
glioma3 / 10688328
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal46 / 336030713
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood2 / 12347816
bone2 / 7165527
bone marrow1 / 4880120
brain12 / 110098910
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye5 / 21105423
heart3 / 8962633
intestine4 / 23447217
kidney2 / 2117779
larynx1 / 2414541
liver2 / 2077439
lung8 / 33697423
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth0 / 670520 
muscle3 / 10771527
nerve1 / 1576863
ovary1 / 1020519
pancreas3 / 21481213
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach2 / 9661920
testis9 / 33044227
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219251_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.15
Adipocyte7.45
AdrenalCortex9.7
Adrenalgland6.5
Amygdala9.4
Appendix9.3
AtrioventricularNode8.35
BDCA4+_DentriticCells9.7
Bonemarrow8.5
BronchialEpithelialCells7.4
CD105+_Endothelial10.25
CD14+_Monocytes9.35
CD19+_BCells(neg._sel.)9.15
CD33+_Myeloid10.95
CD34+11.15
CD4+_Tcells11.35
CD56+_NKCells16.25
CD71+_EarlyErythroid10.75
CD8+_Tcells17.75
CardiacMyocytes11.05
Caudatenucleus7.85
Cerebellum6.6
CerebellumPeduncles9.95
CiliaryGanglion17.6
CingulateCortex9.05
Colorectaladenocarcinoma11.7
DorsalRootGanglion10.85
FetalThyroid8.5
Fetalbrain21.65
Fetalliver7.35
Fetallung7.35
GlobusPallidus7.7
Heart11.05
Hypothalamus9.9
Kidney6.95
Leukemia_chronicMyelogenousK-56211
Leukemia_promyelocytic-HL-607.45
Leukemialymphoblastic(MOLT-4)8.7
Liver11.3
Lung9
Lymphnode7.15
Lymphoma_burkitts(Daudi)10.3
Lymphoma_burkitts(Raji)12.3
MedullaOblongata7.45
OccipitalLobe7.55
OlfactoryBulb6.85
Ovary5.8
Pancreas7
PancreaticIslet8.7
ParietalLobe9.15
Pituitary9.3
Placenta7.35
Pons8.35
PrefrontalCortex10.75
Prostate10.15
Salivarygland6.7
SkeletalMuscle10.25
Skin9.8
SmoothMuscle9.95
Spinalcord9.1
SubthalamicNucleus8
SuperiorCervicalGanglion10.15
TemporalLobe7.25
Testis10.85
TestisGermCell38.25
TestisIntersitial50.85
TestisLeydigCell20.95
TestisSeminiferousTubule22.75
Thalamus9.6
Thymus6.1
Thyroid19.8
Tongue8.65
Tonsil8.25
Trachea6.7
TrigeminalGanglion9.8
Uterus7.85
UterusCorpus7.75
WholeBlood8.95
Wholebrain7.15
colon9.7
pineal_day16.82
pineal_night12.06
retina10.575
small_intestine8.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11326_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.44 ± 0.63
Basal Forebrain3.28 ± 0.56
Basal Part of Pons3.68 ± 0.65
Cerebellar Cortex3.69 ± 0.61
Cerebellar Nuclei3.28 ± 0.67
Claustrum3.14 ± 0.65
Epithalamus4.44 ± 0.94
Frontal Lobe3.62 ± 0.59
Globus Pallidus2.7 ± 0.58
Hypothalamus3.39 ± 0.65
Insula3.76 ± 0.52
Limbic Lobe3.27 ± 0.71
Mesencephalon3.46 ± 0.72
Myelencephalon3.41 ± 0.7
Occipital Lobe3.17 ± 0.83
Parietal Lobe3.49 ± 0.62
Pontine Tegmentum3.44 ± 0.56
Striatum3 ± 0.72
Subthalamus3.22 ± 0.61
Temporal Lobe3.61 ± 0.68
Thalamus3.52 ± 0.6
White Matter2.3 ± 0.66
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00497360 15 763 777 SPLQAVEPISTSVHK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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