AutismKB 2.0

Annotation Detail for RBM28


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Basic Information Top
Gene Symbol:RBM28 ( FLJ10377 )
Gene Full Name: RNA binding motif protein 28
Band: 7q32.1
Quick LinksEntrez ID:55131; OMIM: 612074; Uniprot ID:RBM28_HUMAN; ENSEMBL ID: ENSG00000106344; HGNC ID: 21863
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst9 / 62319144
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile4 / 5555671
adult66 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor4 / 34366116
chondrosarcoma4 / 8282348
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor7 / 11936958
germ cell tumor10 / 26384537
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor3 / 6895943
leukemia5 / 9584252
liver tumor3 / 9635931
lung tumor2 / 10312719
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal105 / 336030731
ovarian tumor4 / 7668252
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor9 / 12494972
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites5 / 40015124
bladder1 / 2975733
blood4 / 12347832
bone1 / 7165513
bone marrow3 / 4880161
brain14 / 110098912
cervix4 / 4817183
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue15 / 21572269
esophagus1 / 2020949
eye7 / 21105433
heart4 / 8962644
intestine4 / 23447217
kidney7 / 21177733
larynx0 / 241450 
liver10 / 20774348
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland8 / 15327152
mouth3 / 6705244
muscle4 / 10771537
nerve1 / 1576863
ovary4 / 10205139
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta8 / 28082528
prostate5 / 18934526
salivary gland0 / 201550 
skin12 / 21057456
spleen0 / 539520 
stomach6 / 9661962
testis8 / 33044224
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus8 / 23287834
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218593_at
Cell line Expression level Expression bar
721_B_lymphoblasts182.1
Adipocyte12.2
AdrenalCortex14.85
Adrenalgland10.9
Amygdala10.45
Appendix13.3
AtrioventricularNode9.55
BDCA4+_DentriticCells24.45
Bonemarrow15.75
BronchialEpithelialCells22.4
CD105+_Endothelial42.6
CD14+_Monocytes13.3
CD19+_BCells(neg._sel.)24.4
CD33+_Myeloid40.3
CD34+113.15
CD4+_Tcells24.65
CD56+_NKCells37.8
CD71+_EarlyErythroid12.4
CD8+_Tcells36.3
CardiacMyocytes18.5
Caudatenucleus10.85
Cerebellum9.9
CerebellumPeduncles13.8
CiliaryGanglion10.45
CingulateCortex13
Colorectaladenocarcinoma17.35
DorsalRootGanglion10.25
FetalThyroid14.95
Fetalbrain12.8
Fetalliver11.15
Fetallung16.1
GlobusPallidus9.2
Heart20.65
Hypothalamus13
Kidney10
Leukemia_chronicMyelogenousK-56270.2
Leukemia_promyelocytic-HL-6030.75
Leukemialymphoblastic(MOLT-4)71.85
Liver16.6
Lung13.15
Lymphnode21.5
Lymphoma_burkitts(Daudi)104.35
Lymphoma_burkitts(Raji)64.15
MedullaOblongata11.05
OccipitalLobe10.95
OlfactoryBulb19.8
Ovary11.05
Pancreas15.3
PancreaticIslet17.4
ParietalLobe13.9
Pituitary21.95
Placenta12.45
Pons12
PrefrontalCortex15.4
Prostate16.8
Salivarygland10.3
SkeletalMuscle17.05
Skin10.15
SmoothMuscle14.9
Spinalcord13.2
SubthalamicNucleus11.2
SuperiorCervicalGanglion14.95
TemporalLobe13.3
Testis11.75
TestisGermCell21.5
TestisIntersitial15.85
TestisLeydigCell21.15
TestisSeminiferousTubule12.05
Thalamus12.7
Thymus30
Thyroid19.2
Tongue12.85
Tonsil15.65
Trachea11.75
TrigeminalGanglion14.45
Uterus21.65
UterusCorpus18
WholeBlood14.5
Wholebrain8.95
colon12.7
pineal_day15.6
pineal_night16.18
retina16.925
small_intestine12.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6143_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.12 ± 0.26
Basal Forebrain8.11 ± 0.2
Basal Part of Pons7.83 ± 0.2
Cerebellar Cortex8.18 ± 0.11
Cerebellar Nuclei7.89 ± 0.2
Claustrum8.28 ± 0.32
Epithalamus8.1 ± 0.17
Frontal Lobe7.85 ± 0.27
Globus Pallidus8.31 ± 0.18
Hypothalamus7.92 ± 0.14
Insula7.82 ± 0.27
Limbic Lobe7.99 ± 0.27
Mesencephalon8.04 ± 0.28
Myelencephalon7.97 ± 0.27
Occipital Lobe8.19 ± 0.28
Parietal Lobe7.98 ± 0.27
Pontine Tegmentum7.92 ± 0.31
Striatum7.95 ± 0.3
Subthalamus7.73 ± 0.13
Temporal Lobe7.9 ± 0.23
Thalamus7.9 ± 0.18
White Matter8.77 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rbm28CBCerebellum66.97
100
Rbm28CTXCerebral cortex100
100
Rbm28HIPHippocampal region100
100
Rbm28HPFHippocampal formation100
100
Rbm28HYHypothalamus100
100
Rbm28LSXLateral septal complex100
100
Rbm28MBMidbrain100
100
Rbm28MYMedulla98.72
100
Rbm28OLFOlfactory bulb100
100
Rbm28PPons100
100
Rbm28PALPallidum100
100
Rbm28RHPRetrohippocampal region100
100
Rbm28sAMYStriatum-like amygdalar nuclei100
100
Rbm28STRStriatum100
100
Rbm28STRdStriatum dorsal region100
100
Rbm28STRvStriatum ventral region100
100
Rbm28THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001161 19 392 410 CLLAASPENEAGGLKLDGR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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