Annotation Detail for LARP1B
Basic Information Top
| Gene Symbol: | LARP1B ( DKFZp686L13217,LARP2,MGC117277,MGC75174 ) |
|---|---|
| Gene Full Name: | La ribonucleoprotein domain family, member 1B |
| Band: | 4q28.2 |
| Quick Links | Entrez ID:55132; OMIM: NA; Uniprot ID:LAR1B_HUMAN; ENSEMBL ID: ENSG00000138709; HGNC ID: 24704 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.657067
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 127 / 1939121 | 65 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 125 / 3360307 | 37 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 59 / 125191 | 471 |  |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 57 / 149255 | 381 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 2 / 89626 | 22 | |
| intestine | 17 / 234472 | 72 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 11 / 207743 | 52 | |
| lung | 8 / 336974 | 23 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 25 / 330442 | 75 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 5 / 51780 | 96 | |
Microarray in - Probe name: A_23_P7253
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.44 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.41 ± 0.23 | |
| Basal Part of Pons | 4.79 ± 0.5 | |
| Cerebellar Cortex | 4.77 ± 0.22 | |
| Cerebellar Nuclei | 4.24 ± 0.42 | |
| Claustrum | 4.56 ± 0.52 | |
| Epithalamus | 4.68 ± 0.46 | |
| Frontal Lobe | 4.57 ± 0.43 | |
| Globus Pallidus | 3.41 ± 0.52 | |
| Hypothalamus | 4.58 ± 0.53 | |
| Insula | 4.58 ± 0.37 | |
| Limbic Lobe | 4.48 ± 0.56 | |
| Mesencephalon | 4.42 ± 0.6 | |
| Myelencephalon | 4.48 ± 0.54 | |
| Occipital Lobe | 4.76 ± 0.4 | |
| Parietal Lobe | 4.66 ± 0.58 | |
| Pontine Tegmentum | 4.55 ± 0.53 | |
| Striatum | 4.12 ± 0.55 | |
| Subthalamus | 4.93 ± 0.6 | |
| Temporal Lobe | 4.66 ± 0.46 | |
| Thalamus | 4.43 ± 0.52 | |
| White Matter | 3.99 ± 0.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1700108L22Rik | CB | Cerebellum | 1.61 | |
| 2.1 | | |||
| 1700108L22Rik | CTX | Cerebral cortex | 1.61 | |
| 1.46 | | |||
| 1700108L22Rik | HIP | Hippocampal region | 1.35 | |
| 1.37 | | |||
| 1700108L22Rik | HPF | Hippocampal formation | 2.68 | |
| 2.57 | | |||
| 1700108L22Rik | HY | Hypothalamus | 0.4 | |
| 0.38 | | |||
| 1700108L22Rik | LSX | Lateral septal complex | 0.08 | |
| 0.08 | | |||
| 1700108L22Rik | MB | Midbrain | 0.88 | |
| 1.24 | | |||
| 1700108L22Rik | MY | Medulla | 1.58 | |
| 2.31 | | |||
| 1700108L22Rik | OLF | Olfactory bulb | 1.75 | |
| 2.45 | | |||
| 1700108L22Rik | P | Pons | 1.05 | |
| 1.36 | | |||
| 1700108L22Rik | PAL | Pallidum | 0.19 | |
| 0.21 | | |||
| 1700108L22Rik | RHP | Retrohippocampal region | 5.76 | |
| 4.91 | | |||
| 1700108L22Rik | sAMY | Striatum-like amygdalar nuclei | 0.44 | |
| 0.67 | | |||
| 1700108L22Rik | STR | Striatum | 0.38 | |
| 0.46 | | |||
| 1700108L22Rik | STRd | Striatum dorsal region | 0.39 | |
| 0.5 | | |||
| 1700108L22Rik | STRv | Striatum ventral region | 0.37 | |
| 0.31 | | |||
| 1700108L22Rik | TH | Thalamus | 0.47 | |
| 0.49 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00028770 | 8 | 771 | 778 | YGLECLFR | Peptide Atlas |