AutismKB 2.0

Annotation Detail for SRBD1


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Basic Information Top
Gene Symbol:SRBD1 ( FLJ10379 )
Gene Full Name: S1 RNA binding domain 1
Band: 2p21
Quick LinksEntrez ID:55133; OMIM: NA; Uniprot ID:SRBD1_HUMAN; ENSEMBL ID: ENSG00000068784; HGNC ID: 25521
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus16 / 56401228
neonate2 / 3109764
infant0 / 236200 
juvenile1 / 5555617
adult51 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor14 / 26384553
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal84 / 336030724
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood6 / 12347848
bone4 / 7165555
bone marrow2 / 4880140
brain18 / 110098916
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine7 / 23447229
kidney2 / 2117779
larynx0 / 241450 
liver4 / 20774319
lung2 / 3369745
lymph0 / 442700 
lymph node6 / 9161065
mammary gland4 / 15327126
mouth1 / 6705214
muscle9 / 10771583
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta5 / 28082517
prostate3 / 18934515
salivary gland0 / 201550 
skin4 / 21057418
spleen5 / 5395292
stomach1 / 9661910
testis29 / 33044287
thymus2 / 8113124
thyroid1 / 4747321
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219055_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.25
Adipocyte3.5
AdrenalCortex3.75
Adrenalgland3
Amygdala3.7
Appendix4
AtrioventricularNode2.75
BDCA4+_DentriticCells5.65
Bonemarrow3.6
BronchialEpithelialCells3.55
CD105+_Endothelial4.25
CD14+_Monocytes5
CD19+_BCells(neg._sel.)4.95
CD33+_Myeloid4.6
CD34+8.55
CD4+_Tcells3.85
CD56+_NKCells10.8
CD71+_EarlyErythroid3.35
CD8+_Tcells3.9
CardiacMyocytes4.75
Caudatenucleus3.15
Cerebellum2.9
CerebellumPeduncles4.05
CiliaryGanglion2.6
CingulateCortex3.65
Colorectaladenocarcinoma3.55
DorsalRootGanglion2.7
FetalThyroid3.95
Fetalbrain3.6
Fetalliver3.1
Fetallung2.95
GlobusPallidus2.65
Heart4.6
Hypothalamus3.85
Kidney2.9
Leukemia_chronicMyelogenousK-5623.25
Leukemia_promyelocytic-HL-603.15
Leukemialymphoblastic(MOLT-4)3.35
Liver4.75
Lung3.9
Lymphnode3.1
Lymphoma_burkitts(Daudi)4.6
Lymphoma_burkitts(Raji)5.1
MedullaOblongata3.25
OccipitalLobe3.15
OlfactoryBulb2.75
Ovary2.4
Pancreas2.95
PancreaticIslet3.8
ParietalLobe3.75
Pituitary4.15
Placenta3.7
Pons3.4
PrefrontalCortex4.45
Prostate4.15
Salivarygland2.9
SkeletalMuscle4.25
Skin2.75
SmoothMuscle4.05
Spinalcord3.8
SubthalamicNucleus3.25
SuperiorCervicalGanglion4.2
TemporalLobe3.2
Testis3.05
TestisGermCell2.95
TestisIntersitial2.95
TestisLeydigCell3.55
TestisSeminiferousTubule3.05
Thalamus3.6
Thymus2.8
Thyroid4.75
Tongue3.55
Tonsil3.5
Trachea3
TrigeminalGanglion3.6
Uterus2.95
UterusCorpus3.2
WholeBlood6.35
Wholebrain3
colon3.6
pineal_day4.42
pineal_night4.36
retina4.3
small_intestine3.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_13758_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.8 ± 0.47
Basal Forebrain5.26 ± 0.32
Basal Part of Pons5.01 ± 0.35
Cerebellar Cortex4.97 ± 0.28
Cerebellar Nuclei5.42 ± 0.41
Claustrum4.95 ± 0.5
Epithalamus5.62 ± 0.19
Frontal Lobe4.93 ± 0.43
Globus Pallidus5.91 ± 0.28
Hypothalamus5.17 ± 0.29
Insula4.87 ± 0.38
Limbic Lobe4.82 ± 0.44
Mesencephalon4.99 ± 0.49
Myelencephalon5.01 ± 0.47
Occipital Lobe4.79 ± 0.34
Parietal Lobe4.88 ± 0.46
Pontine Tegmentum4.92 ± 0.42
Striatum5.01 ± 0.39
Subthalamus4.88 ± 0.22
Temporal Lobe4.92 ± 0.39
Thalamus5.05 ± 0.34
White Matter6.18 ± 0.47
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00499684 13 304 316 TFEELEHVSAPYK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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