Annotation Detail for TMEM38B
Basic Information Top
| Gene Symbol: | TMEM38B ( C9orf87,D4Ertd89e,FLJ10493,TRIC-B,TRICB,bA219P18.1 ) |
|---|---|
| Gene Full Name: | transmembrane protein 38B |
| Band: | 9q31.2 |
| Quick Links | Entrez ID:55151; OMIM: 611236; Uniprot ID:TM38B_HUMAN; ENSEMBL ID: ENSG00000095209; HGNC ID: 25535 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.411925
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 11 / 564012 | 19 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 94 / 3360307 | 27 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 58 / 1100989 | 52 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 5 / 89626 | 55 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 20 / 211777 | 94 | |
| larynx | 0 / 24145 | 0 | |
| liver | 11 / 207743 | 52 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 31 / 330442 | 93 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218772_x_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 15.05 | |
| Adipocyte | 5.05 | |
| AdrenalCortex | 5.6 | |
| Adrenalgland | 4.7 | |
| Amygdala | 5.3 | |
| Appendix | 6.05 | |
| AtrioventricularNode | 4.25 | |
| BDCA4+_DentriticCells | 7.55 | |
| Bonemarrow | 5.2 | |
| BronchialEpithelialCells | 5.05 | |
| CD105+_Endothelial | 5.3 | |
| CD14+_Monocytes | 5.65 | |
| CD19+_BCells(neg._sel.) | 12.2 | |
| CD33+_Myeloid | 7.2 | |
| CD34+ | 7.6 | |
| CD4+_Tcells | 5.45 | |
| CD56+_NKCells | 7.05 | |
| CD71+_EarlyErythroid | 4.95 | |
| CD8+_Tcells | 4.95 | |
| CardiacMyocytes | 7.1 | |
| Caudatenucleus | 4.65 | |
| Cerebellum | 4.2 | |
| CerebellumPeduncles | 5.95 | |
| CiliaryGanglion | 4.25 | |
| CingulateCortex | 5.25 | |
| Colorectaladenocarcinoma | 10.8 | |
| DorsalRootGanglion | 4.1 | |
| FetalThyroid | 5.2 | |
| Fetalbrain | 5 | |
| Fetalliver | 4.6 | |
| Fetallung | 4 | |
| GlobusPallidus | 3.9 | |
| Heart | 7 | |
| Hypothalamus | 5.5 | |
| Kidney | 4.55 | |
| Leukemia_chronicMyelogenousK-562 | 4.7 | |
| Leukemia_promyelocytic-HL-60 | 4.65 | |
| Leukemialymphoblastic(MOLT-4) | 4.15 | |
| Liver | 7 | |
| Lung | 5.6 | |
| Lymphnode | 4.3 | |
| Lymphoma_burkitts(Daudi) | 7.1 | |
| Lymphoma_burkitts(Raji) | 7.85 | |
| MedullaOblongata | 4.6 | |
| OccipitalLobe | 4.6 | |
| OlfactoryBulb | 4 | |
| Ovary | 3.75 | |
| Pancreas | 4.2 | |
| PancreaticIslet | 5.6 | |
| ParietalLobe | 5.55 | |
| Pituitary | 6.2 | |
| Placenta | 5.1 | |
| Pons | 5 | |
| PrefrontalCortex | 6.25 | |
| Prostate | 5.95 | |
| Salivarygland | 4.2 | |
| SkeletalMuscle | 6.2 | |
| Skin | 4.15 | |
| SmoothMuscle | 5.8 | |
| Spinalcord | 5.55 | |
| SubthalamicNucleus | 4.85 | |
| SuperiorCervicalGanglion | 6.4 | |
| TemporalLobe | 4.75 | |
| Testis | 4.4 | |
| TestisGermCell | 4.2 | |
| TestisIntersitial | 4.35 | |
| TestisLeydigCell | 5.35 | |
| TestisSeminiferousTubule | 4.4 | |
| Thalamus | 5.3 | |
| Thymus | 3.9 | |
| Thyroid | 11.45 | |
| Tongue | 5.2 | |
| Tonsil | 5 | |
| Trachea | 4.25 | |
| TrigeminalGanglion | 6.05 | |
| Uterus | 4.1 | |
| UterusCorpus | 4.7 | |
| WholeBlood | 5.55 | |
| Wholebrain | 4.25 | |
| colon | 16.85 | |
| pineal_day | 131.78 | |
| pineal_night | 99.04 | |
| retina | 15.4 | |
| small_intestine | 18.55 | |
- Probe name: A_24_P278156
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.34 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.82 ± 0.28 | |
| Basal Part of Pons | 5.54 ± 0.5 | |
| Cerebellar Cortex | 5.62 ± 0.3 | |
| Cerebellar Nuclei | 6.13 ± 0.5 | |
| Claustrum | 4.96 ± 0.47 | |
| Epithalamus | 5.99 ± 0.51 | |
| Frontal Lobe | 5.42 ± 0.56 | |
| Globus Pallidus | 6.57 ± 0.47 | |
| Hypothalamus | 5.85 ± 0.54 | |
| Insula | 5.27 ± 0.27 | |
| Limbic Lobe | 5.28 ± 0.54 | |
| Mesencephalon | 5.7 ± 0.53 | |
| Myelencephalon | 5.53 ± 0.58 | |
| Occipital Lobe | 5.68 ± 0.58 | |
| Parietal Lobe | 5.45 ± 0.51 | |
| Pontine Tegmentum | 5.72 ± 0.31 | |
| Striatum | 5.98 ± 0.51 | |
| Subthalamus | 5.65 ± 1.07 | |
| Temporal Lobe | 5.29 ± 0.44 | |
| Thalamus | 5.76 ± 0.44 | |
| White Matter | 7.7 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tmem38b | CB | Cerebellum | 1.96 | |
| 2.44 | | |||
| Tmem38b | CTX | Cerebral cortex | 3 | |
| 2.29 | | |||
| Tmem38b | HIP | Hippocampal region | 9.85 | |
| 9.58 | | |||
| Tmem38b | HPF | Hippocampal formation | 8.81 | |
| 7.97 | | |||
| Tmem38b | HY | Hypothalamus | 11.74 | |
| 10.55 | | |||
| Tmem38b | LSX | Lateral septal complex | 1.39 | |
| 1.73 | | |||
| Tmem38b | MB | Midbrain | 4.92 | |
| 4.73 | | |||
| Tmem38b | MY | Medulla | 6.3 | |
| 7.16 | | |||
| Tmem38b | OLF | Olfactory bulb | 9.2 | |
| 8.25 | | |||
| Tmem38b | P | Pons | 12.43 | |
| 14.36 | | |||
| Tmem38b | PAL | Pallidum | 7.35 | |
| 6.14 | | |||
| Tmem38b | RHP | Retrohippocampal region | 6.05 | |
| 4.23 | | |||
| Tmem38b | sAMY | Striatum-like amygdalar nuclei | 1.54 | |
| 1.2 | | |||
| Tmem38b | STR | Striatum | 3.23 | |
| 2.61 | | |||
| Tmem38b | STRd | Striatum dorsal region | 0.78 | |
| 0.74 | | |||
| Tmem38b | STRv | Striatum ventral region | 13.21 | |
| 9.28 | | |||
| Tmem38b | TH | Thalamus | 3.45 | |
| 2.87 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00037826 | 22 | 262 | 283 | SPSNGVGSLASKPVDVASDNVK | Peptide Atlas |