AutismKB 2.0

Annotation Detail for ARMC1


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Basic Information Top
Gene Symbol:ARMC1 ( Arcp,FLJ10511 )
Gene Full Name: armadillo repeat containing 1
Band: 8q13.1
Quick LinksEntrez ID:55156; OMIM: NA; Uniprot ID:ARMC1_HUMAN; ENSEMBL ID: ENSG00000104442; HGNC ID: 17684
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst5 / 6231980
fetus28 / 56401249
neonate1 / 3109732
infant2 / 2362084
juvenile4 / 5555671
adult61 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor3 / 3436687
chondrosarcoma0 / 828230 
colorectal tumor3 / 11424626
esophageal tumor2 / 17290115
gastrointestinal tumor8 / 11936967
germ cell tumor19 / 26384572
glioma4 / 10688337
head and neck tumor4 / 13630229
kidney tumor11 / 68959159
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia5 / 9725051
normal139 / 336030741
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS11 / 12568087
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor4 / 12494932
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites2 / 4001549
bladder0 / 297570 
blood3 / 12347824
bone1 / 7165513
bone marrow1 / 4880120
brain77 / 110098969
cervix3 / 4817162
connective tissue4 / 14925526
ear2 / 16212123
embryonic tissue15 / 21572269
esophagus2 / 2020998
eye4 / 21105418
heart2 / 8962622
intestine8 / 23447234
kidney16 / 21177775
larynx0 / 241450 
liver3 / 20774314
lung9 / 33697426
lymph1 / 4427022
lymph node5 / 9161054
mammary gland6 / 15327139
mouth2 / 6705229
muscle7 / 10771564
nerve0 / 157680 
ovary1 / 1020519
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta13 / 28082546
prostate6 / 18934531
salivary gland0 / 201550 
skin7 / 21057433
spleen0 / 539520 
stomach4 / 9661941
testis15 / 33044245
thymus4 / 8113149
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus7 / 23287830
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218185_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts101.15
Adipocyte14.75
AdrenalCortex13.15
Adrenalgland9.65
Amygdala76.95
Appendix15.8
AtrioventricularNode12.15
BDCA4+_DentriticCells40.35
Bonemarrow12.25
BronchialEpithelialCells28.8
CD105+_Endothelial104.6
CD14+_Monocytes18.05
CD19+_BCells(neg._sel.)56.5
CD33+_Myeloid31.3
CD34+56.6
CD4+_Tcells42.4
CD56+_NKCells48.1
CD71+_EarlyErythroid57.95
CD8+_Tcells29.45
CardiacMyocytes18.9
Caudatenucleus14.05
Cerebellum12.15
CerebellumPeduncles17.3
CiliaryGanglion10.8
CingulateCortex24.3
Colorectaladenocarcinoma15
DorsalRootGanglion12
FetalThyroid13.75
Fetalbrain42.25
Fetalliver16.5
Fetallung11.1
GlobusPallidus10.85
Heart17.15
Hypothalamus28.35
Kidney10.1
Leukemia_chronicMyelogenousK-56219.3
Leukemia_promyelocytic-HL-6034.3
Leukemialymphoblastic(MOLT-4)41.5
Liver16.35
Lung14.75
Lymphnode13.85
Lymphoma_burkitts(Daudi)21.25
Lymphoma_burkitts(Raji)24.2
MedullaOblongata20.75
OccipitalLobe24
OlfactoryBulb11.2
Ovary10.1
Pancreas11
PancreaticIslet14.45
ParietalLobe19.5
Pituitary17.95
Placenta14.9
Pons14.15
PrefrontalCortex61.4
Prostate17.2
Salivarygland13.6
SkeletalMuscle17.5
Skin11.15
SmoothMuscle19.95
Spinalcord15.25
SubthalamicNucleus15.1
SuperiorCervicalGanglion19.1
TemporalLobe13.95
Testis9.5
TestisGermCell12
TestisIntersitial11.75
TestisLeydigCell13.85
TestisSeminiferousTubule12
Thalamus15.15
Thymus8.25
Thyroid19.7
Tongue14.2
Tonsil13.9
Trachea11.75
TrigeminalGanglion14.25
Uterus26.7
UterusCorpus14.15
WholeBlood15.2
Wholebrain43.55
colon28.75
pineal_day26.62
pineal_night22.78
retina25.1
small_intestine24.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1907_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.37 ± 0.33
Basal Forebrain5.28 ± 0.12
Basal Part of Pons5.57 ± 0.27
Cerebellar Cortex5.4 ± 0.45
Cerebellar Nuclei5.51 ± 0.36
Claustrum5.29 ± 0.53
Epithalamus5.19 ± 0.27
Frontal Lobe5.39 ± 0.36
Globus Pallidus5.66 ± 0.24
Hypothalamus5.27 ± 0.48
Insula5.33 ± 0.38
Limbic Lobe5.47 ± 0.39
Mesencephalon5.41 ± 0.37
Myelencephalon5.41 ± 0.41
Occipital Lobe5.61 ± 0.31
Parietal Lobe5.44 ± 0.33
Pontine Tegmentum5.43 ± 0.42
Striatum5.36 ± 0.38
Subthalamus5.52 ± 0.73
Temporal Lobe5.46 ± 0.35
Thalamus5.44 ± 0.32
White Matter6.17 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Armc1CBCerebellum7.98
11.08
Armc1CTXCerebral cortex52.67
44.05
Armc1HIPHippocampal region38.94
67.68
Armc1HPFHippocampal formation29.91
45.82
Armc1HYHypothalamus9.6
8
Armc1LSXLateral septal complex12.48
9.53
Armc1MBMidbrain7.43
7.9
Armc1MYMedulla6.5
8.63
Armc1OLFOlfactory bulb28.85
23.95
Armc1PPons5.88
8.6
Armc1PALPallidum14.11
12.86
Armc1RHPRetrohippocampal region11.12
10.55
Armc1sAMYStriatum-like amygdalar nuclei11.27
8.28
Armc1STRStriatum19.01
13.28
Armc1STRdStriatum dorsal region18.23
12.58
Armc1STRvStriatum ventral region27.94
18.78
Armc1THThalamus10.18
11.37
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
ARMC1_HUMAN_1 22 1 22 MNSSTSTMSEEPDALSVVNQLR PRIDE
PAp00038674 21 258 278 VGSHPEGGASWLSTAANFLSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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