Annotation Detail for FAM82A2
Basic Information Top
| Gene Symbol: | FAM82A2 ( FAM82C,FLJ10579,RMD3,hRMD-3,ptpip51 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 82, member A2 |
| Band: | 15q15.1 |
| Quick Links | Entrez ID:55177; OMIM: 611873; Uniprot ID:RMD3_HUMAN; ENSEMBL ID: ENSG00000137824; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.511067
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 41 / 564012 | 72 | |
| neonate | 7 / 31097 | 225 |  |
| infant | 3 / 23620 | 127 | |
| juvenile | 13 / 55556 | 233 | |
| adult | 148 / 1939121 | 76 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 10 / 94178 | 106 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 21 / 263845 | 79 | |
| glioma | 14 / 106883 | 130 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 13 / 68959 | 188 | |
| leukemia | 13 / 95842 | 135 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 15 / 97250 | 154 | |
| normal | 348 / 3360307 | 103 | |
| ovarian tumor | 13 / 76682 | 169 | |
| pancreatic tumor | 22 / 104616 | 210 | |
| primitive neuroectodermal tumor of the CNS | 33 / 125680 | 262 | |
| prostate cancer | 15 / 102680 | 146 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 10 / 124949 | 80 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 6 / 33197 | 180 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 2 / 29757 | 67 | |
| blood | 13 / 123478 | 105 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 213 / 1100989 | 193 | |
| cervix | 9 / 48171 | 186 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 10 / 89626 | 111 | |
| intestine | 20 / 234472 | 85 | |
| kidney | 34 / 211777 | 160 | |
| larynx | 0 / 24145 | 0 | |
| liver | 13 / 207743 | 62 | |
| lung | 38 / 336974 | 112 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 1 / 91610 | 10 |  |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 25 / 107715 | 232 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 22 / 102051 | 215 | |
| pancreas | 23 / 214812 | 107 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 20 / 280825 | 71 | |
| prostate | 18 / 189345 | 95 | |
| salivary gland | 8 / 20155 | 396 | |
| skin | 16 / 210574 | 75 | |
| spleen | 8 / 53952 | 148 | |
| stomach | 7 / 96619 | 72 | |
| testis | 16 / 330442 | 48 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 6 / 51780 | 115 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218126_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 93.2 | |
| Adipocyte | 85.65 | |
| AdrenalCortex | 56.7 | |
| Adrenalgland | 64.05 | |
| Amygdala | 111.05 | |
| Appendix | 51.9 | |
| AtrioventricularNode | 28.45 | |
| BDCA4+_DentriticCells | 123.05 | |
| Bonemarrow | 50.25 | |
| BronchialEpithelialCells | 55.7 | |
| CD105+_Endothelial | 205.6 | |
| CD14+_Monocytes | 43.25 | |
| CD19+_BCells(neg._sel.) | 35.15 | |
| CD33+_Myeloid | 49.15 | |
| CD34+ | 50.05 | |
| CD4+_Tcells | 56 | |
| CD56+_NKCells | 149.25 | |
| CD71+_EarlyErythroid | 874.75 | |
| CD8+_Tcells | 74.5 | |
| CardiacMyocytes | 49.4 | |
| Caudatenucleus | 82.85 | |
| Cerebellum | 115.45 | |
| CerebellumPeduncles | 91.8 | |
| CiliaryGanglion | 25.5 | |
| CingulateCortex | 90.1 | |
| Colorectaladenocarcinoma | 36.3 | |
| DorsalRootGanglion | 30.65 | |
| FetalThyroid | 61.2 | |
| Fetalbrain | 54.7 | |
| Fetalliver | 115 | |
| Fetallung | 59.95 | |
| GlobusPallidus | 59.05 | |
| Heart | 50.6 | |
| Hypothalamus | 150.2 | |
| Kidney | 54.5 | |
| Leukemia_chronicMyelogenousK-562 | 45.45 | |
| Leukemia_promyelocytic-HL-60 | 40.5 | |
| Leukemialymphoblastic(MOLT-4) | 51.45 | |
| Liver | 58.75 | |
| Lung | 171.2 | |
| Lymphnode | 78.5 | |
| Lymphoma_burkitts(Daudi) | 53 | |
| Lymphoma_burkitts(Raji) | 71.35 | |
| MedullaOblongata | 128.7 | |
| OccipitalLobe | 72.9 | |
| OlfactoryBulb | 104.6 | |
| Ovary | 45.5 | |
| Pancreas | 32.75 | |
| PancreaticIslet | 55.95 | |
| ParietalLobe | 63 | |
| Pituitary | 64.8 | |
| Placenta | 107 | |
| Pons | 48.6 | |
| PrefrontalCortex | 123.85 | |
| Prostate | 62.7 | |
| Salivarygland | 44.6 | |
| SkeletalMuscle | 57.65 | |
| Skin | 29.95 | |
| SmoothMuscle | 50.8 | |
| Spinalcord | 139.8 | |
| SubthalamicNucleus | 85.3 | |
| SuperiorCervicalGanglion | 57 | |
| TemporalLobe | 80.65 | |
| Testis | 54.9 | |
| TestisGermCell | 53.9 | |
| TestisIntersitial | 50.4 | |
| TestisLeydigCell | 55.05 | |
| TestisSeminiferousTubule | 43.65 | |
| Thalamus | 81.4 | |
| Thymus | 51.6 | |
| Thyroid | 78.9 | |
| Tongue | 63.6 | |
| Tonsil | 50.3 | |
| Trachea | 52.35 | |
| TrigeminalGanglion | 50.15 | |
| Uterus | 47.7 | |
| UterusCorpus | 45.4 | |
| WholeBlood | 52.6 | |
| Wholebrain | 227.1 | |
| colon | 58.8 | |
| pineal_day | 125.76 | |
| pineal_night | 106.86 | |
| retina | 113.75 | |
| small_intestine | 71.15 | |
- Probe name: A_24_P296280
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.29 ± 0.72 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.32 ± 0.44 | |
| Basal Part of Pons | 5.03 ± 0.32 | |
| Cerebellar Cortex | 4.99 ± 0.42 | |
| Cerebellar Nuclei | 4.82 ± 0.37 | |
| Claustrum | 4.21 ± 0.77 | |
| Epithalamus | 4.88 ± 0.4 | |
| Frontal Lobe | 4.73 ± 0.5 | |
| Globus Pallidus | 4.41 ± 0.45 | |
| Hypothalamus | 4.31 ± 0.68 | |
| Insula | 4.7 ± 0.4 | |
| Limbic Lobe | 4.54 ± 0.53 | |
| Mesencephalon | 4.58 ± 0.5 | |
| Myelencephalon | 4.64 ± 0.51 | |
| Occipital Lobe | 4.62 ± 0.43 | |
| Parietal Lobe | 4.64 ± 0.52 | |
| Pontine Tegmentum | 4.64 ± 0.6 | |
| Striatum | 4.03 ± 0.49 | |
| Subthalamus | 5.51 ± 1.31 | |
| Temporal Lobe | 4.81 ± 0.39 | |
| Thalamus | 4.73 ± 0.49 | |
| White Matter | 4.84 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1200015F23Rik | CB | Cerebellum | 17.69 | |
| 24.25 | | |||
| 1200015F23Rik | CTX | Cerebral cortex | 5.2 | |
| 4.36 | | |||
| 1200015F23Rik | HIP | Hippocampal region | 2.66 | |
| 2.77 | | |||
| 1200015F23Rik | HPF | Hippocampal formation | 3.14 | |
| 2.81 | | |||
| 1200015F23Rik | HY | Hypothalamus | 0.1 | |
| 0.11 | | |||
| 1200015F23Rik | LSX | Lateral septal complex | 0.17 | |
| 0.15 | | |||
| 1200015F23Rik | MB | Midbrain | 0.44 | |
| 0.63 | | |||
| 1200015F23Rik | MY | Medulla | 3.27 | |
| 3.31 | | |||
| 1200015F23Rik | OLF | Olfactory bulb | 2.45 | |
| 3.38 | | |||
| 1200015F23Rik | P | Pons | 0.23 | |
| 0.19 | | |||
| 1200015F23Rik | PAL | Pallidum | 0.82 | |
| 0.75 | | |||
| 1200015F23Rik | RHP | Retrohippocampal region | 4.02 | |
| 2.97 | | |||
| 1200015F23Rik | sAMY | Striatum-like amygdalar nuclei | 0.77 | |
| 1.02 | | |||
| 1200015F23Rik | STR | Striatum | 2.28 | |
| 2.1 | | |||
| 1200015F23Rik | STRd | Striatum dorsal region | 3.35 | |
| 3.1 | | |||
| 1200015F23Rik | STRv | Striatum ventral region | 0.36 | |
| 0.32 | | |||
| 1200015F23Rik | TH | Thalamus | 0.54 | |
| 0.55 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000422 | 17 | 355 | 371 | AIALQPENPMAHFLLGR | Peptide Atlas |