Annotation Detail for LINS
Basic Information Top
| Gene Symbol: | LINS ( FLJ10583,LINS1,WINS1 ) |
|---|---|
| Gene Full Name: | lines homolog (Drosophila) |
| Band: | 15q26.3 |
| Quick Links | Entrez ID:55180; OMIM: 610350; Uniprot ID:LINES_HUMAN; ENSEMBL ID: ENSG00000140471; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.105633
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 29 / 564012 | 51 |  |
| neonate | 3 / 31097 | 96 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 40 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 108 / 3360307 | 32 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 0 / 96619 | 0 | |
| testis | 12 / 330442 | 36 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P205944
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.79 ± 0.61 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.53 ± 0.45 | |
| Basal Part of Pons | 4.74 ± 0.21 | |
| Cerebellar Cortex | 5.18 ± 0.21 | |
| Cerebellar Nuclei | 4.62 ± 0.42 | |
| Claustrum | 4.25 ± 0.81 | |
| Epithalamus | 4.79 ± 0.61 | |
| Frontal Lobe | 4.76 ± 0.45 | |
| Globus Pallidus | 3.86 ± 0.46 | |
| Hypothalamus | 4.71 ± 0.61 | |
| Insula | 5.01 ± 0.35 | |
| Limbic Lobe | 4.59 ± 0.55 | |
| Mesencephalon | 4.82 ± 0.51 | |
| Myelencephalon | 4.64 ± 0.52 | |
| Occipital Lobe | 4.82 ± 0.51 | |
| Parietal Lobe | 4.72 ± 0.5 | |
| Pontine Tegmentum | 4.71 ± 0.52 | |
| Striatum | 4.68 ± 0.43 | |
| Subthalamus | 4.59 ± 0.25 | |
| Temporal Lobe | 4.86 ± 0.48 | |
| Thalamus | 4.7 ± 0.48 | |
| White Matter | 4.73 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lins2 | CB | Cerebellum | 1.41 | |
| 2.41 | | |||
| Lins2 | CTX | Cerebral cortex | 1.21 | |
| 0.67 | | |||
| Lins2 | HIP | Hippocampal region | 0.6 | |
| 0.54 | | |||
| Lins2 | HPF | Hippocampal formation | 0.71 | |
| 0.53 | | |||
| Lins2 | HY | Hypothalamus | 0.16 | |
| 0.14 | | |||
| Lins2 | LSX | Lateral septal complex | 0.5 | |
| 0.41 | | |||
| Lins2 | MB | Midbrain | 1.34 | |
| 2.03 | | |||
| Lins2 | MY | Medulla | 0.65 | |
| 0.42 | | |||
| Lins2 | OLF | Olfactory bulb | 2.23 | |
| 1.09 | | |||
| Lins2 | P | Pons | 0.63 | |
| 0.6 | | |||
| Lins2 | PAL | Pallidum | 0.13 | |
| 0.19 | | |||
| Lins2 | RHP | Retrohippocampal region | 0.82 | |
| 0.5 | | |||
| Lins2 | sAMY | Striatum-like amygdalar nuclei | 0.44 | |
| 0.16 | | |||
| Lins2 | STR | Striatum | 0.24 | |
| 0.14 | | |||
| Lins2 | STRd | Striatum dorsal region | 0.18 | |
| 0.12 | | |||
| Lins2 | STRv | Striatum ventral region | 0.19 | |
| 0.08 | | |||
| Lins2 | TH | Thalamus | 1.88 | |
| 2.47 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00036250 | 18 | 334 | 351 | MLALANAVLQAVNSGLLK | Peptide Atlas |