AutismKB 2.0

Annotation Detail for AVPR1A


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Basic Information Top
Gene Symbol:AVPR1A ( AVPR1 )
Gene Full Name: arginine vasopressin receptor 1A
Band: 12q14.2
Quick LinksEntrez ID:552; OMIM: 600821; Uniprot ID:V1AR_HUMAN; ENSEMBL ID: ENSG00000166148; HGNC ID: 895
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal31 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain5 / 11009894
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine0 / 2344720 
kidney10 / 21177747
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas4 / 21481218
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206250_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.2
Adipocyte3.25
AdrenalCortex3.4
Adrenalgland2.75
Amygdala3.4
Appendix3.3
AtrioventricularNode2.4
BDCA4+_DentriticCells3.6
Bonemarrow3.2
BronchialEpithelialCells3.25
CD105+_Endothelial3.25
CD14+_Monocytes3.5
CD19+_BCells(neg._sel.)3.55
CD33+_Myeloid4.2
CD34+4.2
CD4+_Tcells3.6
CD56+_NKCells3.9
CD71+_EarlyErythroid3
CD8+_Tcells3.2
CardiacMyocytes5.45
Caudatenucleus2.95
Cerebellum2.65
CerebellumPeduncles3.7
CiliaryGanglion2.2
CingulateCortex3.3
Colorectaladenocarcinoma4.65
DorsalRootGanglion2.45
FetalThyroid3.25
Fetalbrain3.3
Fetalliver2.85
Fetallung2.8
GlobusPallidus2.35
Heart4.1
Hypothalamus3.55
Kidney2.6
Leukemia_chronicMyelogenousK-5622.95
Leukemia_promyelocytic-HL-602.85
Leukemialymphoblastic(MOLT-4)2.65
Liver5.15
Lung3.95
Lymphnode2.85
Lymphoma_burkitts(Daudi)4.15
Lymphoma_burkitts(Raji)4.85
MedullaOblongata3
OccipitalLobe2.95
OlfactoryBulb2.55
Ovary2.15
Pancreas2.65
PancreaticIslet3.45
ParietalLobe3.45
Pituitary3.8
Placenta3.45
Pons3.1
PrefrontalCortex4.1
Prostate3.85
Salivarygland2.6
SkeletalMuscle3.75
Skin2.45
SmoothMuscle3.95
Spinalcord3.5
SubthalamicNucleus2.95
SuperiorCervicalGanglion3.55
TemporalLobe3
Testis2.8
TestisGermCell2.8
TestisIntersitial2.75
TestisLeydigCell3.25
TestisSeminiferousTubule2.8
Thalamus3.3
Thymus2.6
Thyroid4.1
Tongue3.2
Tonsil3.15
Trachea2.75
TrigeminalGanglion3.3
Uterus3.5
UterusCorpus2.85
WholeBlood3.6
Wholebrain2.8
colon3.25
pineal_day4.06
pineal_night3.98
retina3.975
small_intestine3.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P25246
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.34 ± 0.86
Basal Forebrain2.66 ± 0.74
Basal Part of Pons2.47 ± 0.43
Cerebellar Cortex2.38 ± 0.54
Cerebellar Nuclei2.81 ± 0.77
Claustrum3.13 ± 0.61
Epithalamus2.65 ± 1.38
Frontal Lobe2.8 ± 0.87
Globus Pallidus2.73 ± 0.64
Hypothalamus3.11 ± 0.29
Insula2.72 ± 0.73
Limbic Lobe2.88 ± 0.74
Mesencephalon2.96 ± 0.72
Myelencephalon2.8 ± 0.77
Occipital Lobe2.88 ± 0.95
Parietal Lobe2.67 ± 0.84
Pontine Tegmentum2.79 ± 0.79
Striatum2.41 ± 0.73
Subthalamus2.63 ± 0.68
Temporal Lobe2.88 ± 0.85
Thalamus2.55 ± 0.84
White Matter2.55 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Avpr1aCBCerebellum2.67
4.6
Avpr1aCTXCerebral cortex1.84
2.28
Avpr1aHIPHippocampal region3.18
4.08
Avpr1aHPFHippocampal formation2.29
2.61
Avpr1aHYHypothalamus4.41
4.59
Avpr1aLSXLateral septal complex12.75
11.43
Avpr1aMBMidbrain1.29
1.64
Avpr1aMYMedulla2.59
3.89
Avpr1aOLFOlfactory bulb1.67
1.35
Avpr1aPPons3
4.32
Avpr1aPALPallidum5.21
5.84
Avpr1aRHPRetrohippocampal region1.25
1.1
Avpr1asAMYStriatum-like amygdalar nuclei2.01
2.7
Avpr1aSTRStriatum1.66
1.79
Avpr1aSTRdStriatum dorsal region0.74
1.07
Avpr1aSTRvStriatum ventral region0.52
0.42
Avpr1aTHThalamus1.33
2.19
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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