AutismKB 2.0

Annotation Detail for SBNO1


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Basic Information Top
Gene Symbol:SBNO1 ( FLJ10701,FLJ10833,FLJ14066,FLJ16176,FLJ35199,MOP3,Sno )
Gene Full Name: strawberry notch homolog 1 (Drosophila)
Band: 12q24.31
Quick LinksEntrez ID:55206; OMIM: NA; Uniprot ID:SBNO1_HUMAN; ENSEMBL ID: ENSG00000139697; HGNC ID: 22973
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus32 / 56401256
neonate1 / 3109732
infant2 / 2362084
juvenile1 / 5555617
adult99 / 193912151
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor1 / 3436629
chondrosarcoma7 / 8282384
colorectal tumor4 / 11424635
esophageal tumor2 / 17290115
gastrointestinal tumor4 / 11936933
germ cell tumor30 / 263845113
glioma4 / 10688337
head and neck tumor12 / 13630288
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor8 / 9635983
lung tumor1 / 1031279
lymphoma4 / 7175555
non-neoplasia4 / 9725041
normal172 / 336030751
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS11 / 12568087
prostate cancer1 / 1026809
retinoblastoma2 / 4635643
skin tumor2 / 12494916
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder1 / 2975733
blood4 / 12347832
bone3 / 7165541
bone marrow1 / 4880120
brain39 / 110098935
cervix1 / 4817120
connective tissue5 / 14925533
ear1 / 1621261
embryonic tissue10 / 21572246
esophagus2 / 2020998
eye15 / 21105471
heart3 / 8962633
intestine9 / 23447238
kidney12 / 21177756
larynx0 / 241450 
liver10 / 20774348
lung4 / 33697411
lymph2 / 4427045
lymph node5 / 9161054
mammary gland16 / 153271104
mouth7 / 67052104
muscle10 / 10771592
nerve1 / 1576863
ovary0 / 1020510 
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta14 / 28082549
prostate2 / 18934510
salivary gland1 / 2015549
skin10 / 21057447
spleen1 / 5395218
stomach1 / 9661910
testis34 / 330442102
thymus10 / 81131123
thyroid3 / 4747363
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord0 / 136800 
uterus17 / 23287872
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218737_at
Cell line Expression level Expression bar
721_B_lymphoblasts35.9
Adipocyte8.4
AdrenalCortex10.85
Adrenalgland7.75
Amygdala8.35
Appendix14.7
AtrioventricularNode9
BDCA4+_DentriticCells9.95
Bonemarrow9.9
BronchialEpithelialCells8.4
CD105+_Endothelial9.2
CD14+_Monocytes10.3
CD19+_BCells(neg._sel.)8.9
CD33+_Myeloid10.45
CD34+10.2
CD4+_Tcells11.05
CD56+_NKCells9.7
CD71+_EarlyErythroid8.65
CD8+_Tcells8.3
CardiacMyocytes14
Caudatenucleus7.8
Cerebellum6.85
CerebellumPeduncles10.85
CiliaryGanglion8.9
CingulateCortex9.1
Colorectaladenocarcinoma8.5
DorsalRootGanglion8.35
FetalThyroid8.85
Fetalbrain8.1
Fetalliver7.95
Fetallung6.45
GlobusPallidus7.45
Heart15.15
Hypothalamus8.45
Kidney8.4
Leukemia_chronicMyelogenousK-5627.85
Leukemia_promyelocytic-HL-607.55
Leukemialymphoblastic(MOLT-4)7.95
Liver13.1
Lung9.2
Lymphnode6.9
Lymphoma_burkitts(Daudi)11.8
Lymphoma_burkitts(Raji)14.3
MedullaOblongata8.75
OccipitalLobe7.65
OlfactoryBulb6.6
Ovary6.95
Pancreas8.65
PancreaticIslet9.6
ParietalLobe9.7
Pituitary9.95
Placenta8.25
Pons9
PrefrontalCortex9.6
Prostate9.65
Salivarygland7.55
SkeletalMuscle12.55
Skin12.4
SmoothMuscle9.75
Spinalcord9.2
SubthalamicNucleus8.75
SuperiorCervicalGanglion15.3
TemporalLobe10.35
Testis7.4
TestisGermCell10.7
TestisIntersitial18.7
TestisLeydigCell10.6
TestisSeminiferousTubule13.15
Thalamus9.25
Thymus6.35
Thyroid10.15
Tongue10.4
Tonsil8.85
Trachea7
TrigeminalGanglion17.9
Uterus11.35
UterusCorpus9
WholeBlood9.85
Wholebrain6.6
colon8.3
pineal_day10.88
pineal_night10.78
retina10.4
small_intestine8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_28_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.98 ± 0.44
Basal Forebrain7.14 ± 0.12
Basal Part of Pons7.33 ± 0.34
Cerebellar Cortex7.47 ± 0.18
Cerebellar Nuclei7.01 ± 0.61
Claustrum7.05 ± 0.54
Epithalamus7.45 ± 0.31
Frontal Lobe7.34 ± 0.34
Globus Pallidus6.46 ± 0.28
Hypothalamus7.11 ± 0.36
Insula7.29 ± 0.18
Limbic Lobe7.2 ± 0.44
Mesencephalon7.04 ± 0.47
Myelencephalon7.08 ± 0.45
Occipital Lobe6.84 ± 0.49
Parietal Lobe7.16 ± 0.33
Pontine Tegmentum7.17 ± 0.4
Striatum6.55 ± 0.32
Subthalamus7.47 ± 0.04
Temporal Lobe7.36 ± 0.34
Thalamus6.95 ± 0.4
White Matter6.84 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sbno1CBCerebellum59.24
34.02
Sbno1CTXCerebral cortex89.55
70.94
Sbno1HIPHippocampal region75.72
82.87
Sbno1HPFHippocampal formation82
77.19
Sbno1HYHypothalamus40.75
23.52
Sbno1LSXLateral septal complex60.12
35.15
Sbno1MBMidbrain26.84
19.46
Sbno1MYMedulla44.37
37.89
Sbno1OLFOlfactory bulb94.51
73.99
Sbno1PPons39.51
32.61
Sbno1PALPallidum31.24
21.13
Sbno1RHPRetrohippocampal region87.71
69.11
Sbno1sAMYStriatum-like amygdalar nuclei65.1
37.71
Sbno1STRStriatum52.95
30.9
Sbno1STRdStriatum dorsal region45.78
26.98
Sbno1STRvStriatum ventral region71.44
39.7
Sbno1THThalamus33.45
22.89
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00072965 11 490 500 LGIWGEGTPFR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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