Annotation Detail for LEPREL1
Basic Information Top
| Gene Symbol: | LEPREL1 ( FLJ10718,MLAT4,P3H2 ) |
|---|---|
| Gene Full Name: | leprecan-like 1 |
| Band: | 3q28 |
| Quick Links | Entrez ID:55214; OMIM: 610341; Uniprot ID:P3H2_HUMAN; ENSEMBL ID: ENSG00000090530; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.374191
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 66 / 1939121 | 34 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 8 / 68959 | 116 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 94 / 3360307 | 27 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 1 / 89626 | 11 | |
| intestine | 17 / 234472 | 72 | |
| kidney | 27 / 211777 | 127 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 19 / 189345 | 100 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 1 / 96619 | 10 | |
| testis | 11 / 330442 | 33 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 14 / 232878 | 60 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218717_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 318.5 |  |
| Adipocyte | 4 | |
| AdrenalCortex | 17.85 | |
| Adrenalgland | 4.15 | |
| Amygdala | 4.1 | |
| Appendix | 4 | |
| AtrioventricularNode | 3.05 | |
| BDCA4+_DentriticCells | 149.9 | |
| Bonemarrow | 4.05 | |
| BronchialEpithelialCells | 4 | |
| CD105+_Endothelial | 4.1 | |
| CD14+_Monocytes | 4.3 | |
| CD19+_BCells(neg._sel.) | 4.2 | |
| CD33+_Myeloid | 5.15 | |
| CD34+ | 5.15 | |
| CD4+_Tcells | 4.35 | |
| CD56+_NKCells | 4.8 | |
| CD71+_EarlyErythroid | 3.7 | |
| CD8+_Tcells | 3.85 | |
| CardiacMyocytes | 5.15 | |
| Caudatenucleus | 3.6 | |
| Cerebellum | 3.25 | |
| CerebellumPeduncles | 4.55 | |
| CiliaryGanglion | 2.95 | |
| CingulateCortex | 4.1 | |
| Colorectaladenocarcinoma | 4 | |
| DorsalRootGanglion | 4.55 | |
| FetalThyroid | 3.9 | |
| Fetalbrain | 4.05 | |
| Fetalliver | 3.45 | |
| Fetallung | 5.8 | |
| GlobusPallidus | 2.95 | |
| Heart | 5.1 | |
| Hypothalamus | 4.4 | |
| Kidney | 5.05 | |
| Leukemia_chronicMyelogenousK-562 | 3.65 | |
| Leukemia_promyelocytic-HL-60 | 3.55 | |
| Leukemialymphoblastic(MOLT-4) | 3.25 | |
| Liver | 5.3 | |
| Lung | 17.15 | |
| Lymphnode | 3.5 | |
| Lymphoma_burkitts(Daudi) | 5.15 | |
| Lymphoma_burkitts(Raji) | 5.6 | |
| MedullaOblongata | 3.65 | |
| OccipitalLobe | 3.55 | |
| OlfactoryBulb | 7.45 | |
| Ovary | 2.65 | |
| Pancreas | 3.2 | |
| PancreaticIslet | 4.25 | |
| ParietalLobe | 4.15 | |
| Pituitary | 4.95 | |
| Placenta | 8.8 | |
| Pons | 3.8 | |
| PrefrontalCortex | 4.9 | |
| Prostate | 58.3 | |
| Salivarygland | 3.2 | |
| SkeletalMuscle | 6.05 | |
| Skin | 7.1 | |
| SmoothMuscle | 4.55 | |
| Spinalcord | 5.8 | |
| SubthalamicNucleus | 3.65 | |
| SuperiorCervicalGanglion | 4.55 | |
| TemporalLobe | 3.65 | |
| Testis | 3.6 | |
| TestisGermCell | 3.35 | |
| TestisIntersitial | 3.4 | |
| TestisLeydigCell | 4.75 | |
| TestisSeminiferousTubule | 3.45 | |
| Thalamus | 4 | |
| Thymus | 3.15 | |
| Thyroid | 5 | |
| Tongue | 3.95 | |
| Tonsil | 3.9 | |
| Trachea | 3.4 | |
| TrigeminalGanglion | 4.05 | |
| Uterus | 3.3 | |
| UterusCorpus | 3.6 | |
| WholeBlood | 4.4 | |
| Wholebrain | 3.35 | |
| colon | 4.05 | |
| pineal_day | 5.06 | |
| pineal_night | 5.12 | |
| retina | 5.925 | |
| small_intestine | 3.85 | |
- Probe name: A_23_P69179
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.72 ± 0.24 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.32 ± 0.23 | |
| Basal Part of Pons | 7.55 ± 0.27 | |
| Cerebellar Cortex | 6.91 ± 0.36 | |
| Cerebellar Nuclei | 7.51 ± 0.26 | |
| Claustrum | 8.21 ± 0.35 | |
| Epithalamus | 8.45 ± 0.53 | |
| Frontal Lobe | 7.55 ± 0.44 | |
| Globus Pallidus | 7.93 ± 0.37 | |
| Hypothalamus | 8.21 ± 0.33 | |
| Insula | 7.8 ± 0.35 | |
| Limbic Lobe | 7.47 ± 0.61 | |
| Mesencephalon | 7.59 ± 0.43 | |
| Myelencephalon | 7.5 ± 0.55 | |
| Occipital Lobe | 7.26 ± 0.38 | |
| Parietal Lobe | 7.51 ± 0.36 | |
| Pontine Tegmentum | 7.44 ± 0.5 | |
| Striatum | 7.07 ± 0.75 | |
| Subthalamus | 6.98 ± 0.1 | |
| Temporal Lobe | 7.57 ± 0.36 | |
| Thalamus | 7.16 ± 0.47 | |
| White Matter | 9.15 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Leprel1 | CB | Cerebellum | 1.34 | |
| 1.54 | | |||
| Leprel1 | CTX | Cerebral cortex | 3.54 | |
| 4.05 | | |||
| Leprel1 | HIP | Hippocampal region | 3.67 | |
| 3.59 | | |||
| Leprel1 | HPF | Hippocampal formation | 2.49 | |
| 2.34 | | |||
| Leprel1 | HY | Hypothalamus | 0.12 | |
| 0.12 | | |||
| Leprel1 | LSX | Lateral septal complex | 0.07 | |
| 0.03 | | |||
| Leprel1 | MB | Midbrain | 0.86 | |
| 0.85 | | |||
| Leprel1 | MY | Medulla | 2.14 | |
| 2.12 | | |||
| Leprel1 | OLF | Olfactory bulb | 4.37 | |
| 3.5 | | |||
| Leprel1 | P | Pons | 0.96 | |
| 1.15 | | |||
| Leprel1 | PAL | Pallidum | 0.2 | |
| 0.14 | | |||
| Leprel1 | RHP | Retrohippocampal region | 0.43 | |
| 0.53 | | |||
| Leprel1 | sAMY | Striatum-like amygdalar nuclei | 0.12 | |
| 0.19 | | |||
| Leprel1 | STR | Striatum | 0.39 | |
| 0.38 | | |||
| Leprel1 | STRd | Striatum dorsal region | 0.55 | |
| 0.57 | | |||
| Leprel1 | STRv | Striatum ventral region | 0.29 | |
| 0.17 | | |||
| Leprel1 | TH | Thalamus | 0.87 | |
| 0.77 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00505830 | 20 | 92 | 111 | HPLPPPPPGEGPGAELPLFR | Peptide Atlas |