AutismKB 2.0

Annotation Detail for SLC38A7


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SLC38A7 ( FLJ10815,FLJ12724 )
Gene Full Name: solute carrier family 38, member 7
Band: 16q21
Quick LinksEntrez ID:55238; OMIM: NA; Uniprot ID:S38A7_HUMAN; ENSEMBL ID: ENSG00000103042; HGNC ID: 25582
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus38 / 56401267
neonate5 / 31097160
infant0 / 236200 
juvenile1 / 5555617
adult86 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor44 / 263845166
glioma4 / 10688337
head and neck tumor14 / 136302102
kidney tumor3 / 6895943
leukemia4 / 9584241
liver tumor5 / 9635951
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal188 / 336030755
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer10 / 10268097
retinoblastoma5 / 46356107
skin tumor5 / 12494940
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites1 / 4001524
bladder1 / 2975733
blood4 / 12347832
bone1 / 7165513
bone marrow1 / 4880120
brain82 / 110098974
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye7 / 21105433
heart3 / 8962633
intestine7 / 23447229
kidney17 / 21177780
larynx1 / 2414541
liver6 / 20774328
lung10 / 33697429
lymph0 / 442700 
lymph node2 / 9161021
mammary gland4 / 15327126
mouth11 / 67052164
muscle6 / 10771555
nerve1 / 1576863
ovary10 / 10205197
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta12 / 28082542
prostate10 / 18934552
salivary gland0 / 201550 
skin11 / 21057452
spleen3 / 5395255
stomach2 / 9661920
testis55 / 330442166
thymus5 / 8113161
thyroid5 / 47473105
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus13 / 23287855
vascular9 / 51780173
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218727_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.95
Adipocyte4.55
AdrenalCortex4.85
Adrenalgland4.35
Amygdala5.45
Appendix4.6
AtrioventricularNode3.6
BDCA4+_DentriticCells5.3
Bonemarrow4.5
BronchialEpithelialCells4.5
CD105+_Endothelial4.7
CD14+_Monocytes6.75
CD19+_BCells(neg._sel.)4.75
CD33+_Myeloid7.5
CD34+6.05
CD4+_Tcells5.2
CD56+_NKCells5.7
CD71+_EarlyErythroid4.15
CD8+_Tcells4.45
CardiacMyocytes5.9
Caudatenucleus4.15
Cerebellum3.7
CerebellumPeduncles5.3
CiliaryGanglion3.25
CingulateCortex9.15
Colorectaladenocarcinoma4.65
DorsalRootGanglion3.5
FetalThyroid4.55
Fetalbrain4.6
Fetalliver3.95
Fetallung3.65
GlobusPallidus3.35
Heart7.05
Hypothalamus5.2
Kidney3.7
Leukemia_chronicMyelogenousK-5624.05
Leukemia_promyelocytic-HL-603.95
Leukemialymphoblastic(MOLT-4)3.6
Liver6.1
Lung5.2
Lymphnode3.85
Lymphoma_burkitts(Daudi)5.85
Lymphoma_burkitts(Raji)6.35
MedullaOblongata4.25
OccipitalLobe4.2
OlfactoryBulb3.95
Ovary3
Pancreas3.65
PancreaticIslet4.75
ParietalLobe4.85
Pituitary5.35
Placenta4.9
Pons4.45
PrefrontalCortex24.45
Prostate5.55
Salivarygland3.6
SkeletalMuscle5.4
Skin3.5
SmoothMuscle5.45
Spinalcord4.9
SubthalamicNucleus4.2
SuperiorCervicalGanglion5.1
TemporalLobe4.1
Testis4.35
TestisGermCell11.75
TestisIntersitial4
TestisLeydigCell4.65
TestisSeminiferousTubule4
Thalamus4.7
Thymus3.7
Thyroid5.9
Tongue4.45
Tonsil4.35
Trachea3.8
TrigeminalGanglion4.6
Uterus3.6
UterusCorpus4
WholeBlood4.85
Wholebrain4.65
colon4.4
pineal_day9.58
pineal_night7
retina6
small_intestine4.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P270688
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.11 ± 1.01
Basal Forebrain2.67 ± 0.28
Basal Part of Pons2.52 ± 0.41
Cerebellar Cortex3.28 ± 0.56
Cerebellar Nuclei2.98 ± 0.64
Claustrum3.31 ± 0.69
Epithalamus2.58 ± 0.74
Frontal Lobe2.86 ± 0.69
Globus Pallidus2.51 ± 0.52
Hypothalamus3.21 ± 0.96
Insula2.5 ± 0.62
Limbic Lobe2.83 ± 0.61
Mesencephalon3.01 ± 0.65
Myelencephalon2.89 ± 0.63
Occipital Lobe2.98 ± 0.57
Parietal Lobe2.81 ± 0.67
Pontine Tegmentum2.97 ± 0.71
Striatum2.53 ± 0.65
Subthalamus3.17 ± 0.32
Temporal Lobe2.92 ± 0.7
Thalamus2.89 ± 0.63
White Matter2.71 ± 0.68
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC031853CBCerebellum6.72
6.65
BC031853CTXCerebral cortex12.15
9.23
BC031853HIPHippocampal region21.63
23.91
BC031853HPFHippocampal formation23.13
22.88
BC031853HYHypothalamus6.66
5.87
BC031853LSXLateral septal complex0.34
0.3
BC031853MBMidbrain4.16
4.15
BC031853MYMedulla11.47
13.12
BC031853OLFOlfactory bulb18.05
14.87
BC031853PPons12.14
14.52
BC031853PALPallidum3.39
3.09
BC031853RHPRetrohippocampal region29.06
23.87
BC031853sAMYStriatum-like amygdalar nuclei2.38
1.58
BC031853STRStriatum1.92
1.49
BC031853STRdStriatum dorsal region1.1
0.9
BC031853STRvStriatum ventral region4.71
3.39
BC031853THThalamus6.37
5.34
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved