AutismKB 2.0

Annotation Detail for WDR41


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Basic Information Top
Gene Symbol:WDR41 ( FLJ10904 )
Gene Full Name: WD repeat domain 41
Band: 5q13.3-q14.1
Quick LinksEntrez ID:55255; OMIM: NA; Uniprot ID:WDR41_HUMAN; ENSEMBL ID: ENSG00000164253; HGNC ID: 25601
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst4 / 6231964
fetus34 / 56401260
neonate4 / 31097128
infant2 / 2362084
juvenile1 / 5555617
adult88 / 193912145
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma3 / 8282336
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor18 / 26384568
glioma6 / 10688356
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma4 / 7175555
non-neoplasia7 / 9725071
normal222 / 336030766
ovarian tumor3 / 7668239
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma7 / 46356151
skin tumor2 / 12494916
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites5 / 40015124
bladder1 / 2975733
blood3 / 12347824
bone8 / 71655111
bone marrow3 / 4880161
brain92 / 110098983
cervix2 / 4817141
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue18 / 21572283
esophagus0 / 202090 
eye17 / 21105480
heart9 / 89626100
intestine5 / 23447221
kidney21 / 21177799
larynx0 / 241450 
liver10 / 20774348
lung17 / 33697450
lymph2 / 4427045
lymph node9 / 9161098
mammary gland7 / 15327145
mouth3 / 6705244
muscle1 / 1077159
nerve0 / 157680 
ovary3 / 10205129
pancreas2 / 2148129
parathyroid1 / 2053948
pharynx5 / 41328120
pituitary gland1 / 1658560
placenta10 / 28082535
prostate5 / 18934526
salivary gland0 / 201550 
skin16 / 21057475
spleen2 / 5395237
stomach3 / 9661931
testis34 / 330442102
thymus4 / 8113149
thyroid4 / 4747384
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord3 / 13680219
uterus15 / 23287864
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218055_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts153.6
Adipocyte19.55
AdrenalCortex25.25
Adrenalgland15.75
Amygdala21.85
Appendix19.45
AtrioventricularNode15.1
BDCA4+_DentriticCells77.5
Bonemarrow20.85
BronchialEpithelialCells77.1
CD105+_Endothelial88.75
CD14+_Monocytes88.5
CD19+_BCells(neg._sel.)47.65
CD33+_Myeloid137.1
CD34+265.25
CD4+_Tcells20.3
CD56+_NKCells108.95
CD71+_EarlyErythroid18.15
CD8+_Tcells21.3
CardiacMyocytes33.25
Caudatenucleus18.35
Cerebellum16.75
CerebellumPeduncles22.25
CiliaryGanglion16.5
CingulateCortex20.8
Colorectaladenocarcinoma18.15
DorsalRootGanglion15.25
FetalThyroid22.85
Fetalbrain31.55
Fetalliver16.2
Fetallung15.95
GlobusPallidus15.2
Heart27.1
Hypothalamus22.2
Kidney12.75
Leukemia_chronicMyelogenousK-56230.4
Leukemia_promyelocytic-HL-6037.95
Leukemialymphoblastic(MOLT-4)19.85
Liver21.4
Lung15.3
Lymphnode16.65
Lymphoma_burkitts(Daudi)68.2
Lymphoma_burkitts(Raji)82.7
MedullaOblongata17.6
OccipitalLobe15.75
OlfactoryBulb16.1
Ovary12.9
Pancreas15.45
PancreaticIslet18.35
ParietalLobe22.5
Pituitary22.65
Placenta10.1
Pons16.35
PrefrontalCortex26.8
Prostate18.55
Salivarygland19.9
SkeletalMuscle32.35
Skin17.25
SmoothMuscle23.05
Spinalcord33.8
SubthalamicNucleus23.2
SuperiorCervicalGanglion29.5
TemporalLobe17
Testis16.65
TestisGermCell15.75
TestisIntersitial16.35
TestisLeydigCell20.4
TestisSeminiferousTubule19.9
Thalamus23.3
Thymus13.45
Thyroid23.45
Tongue22.85
Tonsil19.35
Trachea17.25
TrigeminalGanglion19.8
Uterus14.3
UterusCorpus18.6
WholeBlood23.55
Wholebrain17.4
colon16.35
pineal_day75.92
pineal_night76.84
retina24.675
small_intestine17.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_289_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.96 ± 0.45
Basal Forebrain7.19 ± 0.2
Basal Part of Pons7.44 ± 0.15
Cerebellar Cortex7.15 ± 0.31
Cerebellar Nuclei7.06 ± 0.55
Claustrum6.97 ± 0.45
Epithalamus7.13 ± 0.29
Frontal Lobe7.27 ± 0.27
Globus Pallidus7.51 ± 0.26
Hypothalamus7.32 ± 0.24
Insula7.17 ± 0.26
Limbic Lobe7.11 ± 0.34
Mesencephalon7.16 ± 0.3
Myelencephalon7.1 ± 0.38
Occipital Lobe6.88 ± 0.34
Parietal Lobe7.22 ± 0.28
Pontine Tegmentum7.14 ± 0.27
Striatum6.95 ± 0.32
Subthalamus7.68 ± 0.08
Temporal Lobe7.18 ± 0.24
Thalamus7.12 ± 0.31
White Matter7.78 ± 0.13
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Wdr41CBCerebellum0.5
0.66
Wdr41CTXCerebral cortex0.29
0.33
Wdr41HIPHippocampal region0.15
0.15
Wdr41HPFHippocampal formation0.16
0.32
Wdr41HYHypothalamus0.16
0.29
Wdr41LSXLateral septal complex0.07
0.04
Wdr41MBMidbrain0.08
0.14
Wdr41MYMedulla0.41
0.78
Wdr41OLFOlfactory bulb0.38
0.54
Wdr41PPons0.42
0.6
Wdr41PALPallidum0
0
Wdr41RHPRetrohippocampal region0.17
0.61
Wdr41sAMYStriatum-like amygdalar nuclei0.05
0.06
Wdr41STRStriatum0.2
0.13
Wdr41STRdStriatum dorsal region0.26
0.16
Wdr41STRvStriatum ventral region0.09
0.07
Wdr41THThalamus0.17
0.22
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00504555 22 19 40 SPLQTIGEEQTQNPYTELLVLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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