AutismKB 2.0

Annotation Detail for AGPAT5


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Basic Information Top
Gene Symbol:AGPAT5 ( 1AGPAT5,LPAATE )
Gene Full Name: 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
Band: 8p23.1
Quick LinksEntrez ID:55326; OMIM: NA; Uniprot ID:PLCE_HUMAN; ENSEMBL ID: ENSG00000155189; HGNC ID: 20886
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst8 / 62319128
fetus47 / 56401283
neonate0 / 310970 
infant0 / 236200 
juvenile8 / 55556143
adult130 / 193912167
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor6 / 11424652
esophageal tumor1 / 1729057
gastrointestinal tumor9 / 11936975
germ cell tumor22 / 26384583
glioma6 / 10688356
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor10 / 96359103
lung tumor2 / 10312719
lymphoma5 / 7175569
non-neoplasia0 / 972500 
normal245 / 336030772
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer1 / 1026809
retinoblastoma4 / 4635686
skin tumor4 / 12494932
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites4 / 4001599
bladder3 / 29757100
blood5 / 12347840
bone5 / 7165569
bone marrow1 / 4880120
brain62 / 110098956
cervix1 / 4817120
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue25 / 215722115
esophagus1 / 2020949
eye5 / 21105423
heart0 / 896260 
intestine11 / 23447246
kidney12 / 21177756
larynx0 / 241450 
liver19 / 20774391
lung9 / 33697426
lymph0 / 442700 
lymph node10 / 91610109
mammary gland7 / 15327145
mouth1 / 6705214
muscle7 / 10771564
nerve3 / 15768190
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta55 / 280825195
prostate6 / 18934531
salivary gland0 / 201550 
skin8 / 21057437
spleen0 / 539520 
stomach3 / 9661931
testis76 / 330442229
thymus8 / 8113198
thyroid2 / 4747342
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord0 / 136800 
uterus22 / 23287894
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218096_at
Cell line Expression level Expression bar
721_B_lymphoblasts332.65
Adipocyte12.75
AdrenalCortex22.05
Adrenalgland25.05
Amygdala171.1
Appendix11.9
AtrioventricularNode14.35
BDCA4+_DentriticCells70.9
Bonemarrow19.15
BronchialEpithelialCells68.1
CD105+_Endothelial206.65
CD14+_Monocytes25.7
CD19+_BCells(neg._sel.)190.6
CD33+_Myeloid24.15
CD34+217.3
CD4+_Tcells22.4
CD56+_NKCells45.6
CD71+_EarlyErythroid54.9
CD8+_Tcells20.85
CardiacMyocytes24.15
Caudatenucleus73.85
Cerebellum14.5
CerebellumPeduncles18.85
CiliaryGanglion10.95
CingulateCortex24.45
Colorectaladenocarcinoma19.1
DorsalRootGanglion9.95
FetalThyroid15.1
Fetalbrain79.1
Fetalliver36.7
Fetallung29.2
GlobusPallidus13.3
Heart23.65
Hypothalamus95.6
Kidney25.8
Leukemia_chronicMyelogenousK-56276.7
Leukemia_promyelocytic-HL-60163.4
Leukemialymphoblastic(MOLT-4)91
Liver24.8
Lung12.3
Lymphnode13.5
Lymphoma_burkitts(Daudi)141
Lymphoma_burkitts(Raji)42.3
MedullaOblongata36.35
OccipitalLobe48.65
OlfactoryBulb27.25
Ovary12
Pancreas13.25
PancreaticIslet24
ParietalLobe32.05
Pituitary58.45
Placenta66.45
Pons20.85
PrefrontalCortex38.3
Prostate42.6
Salivarygland13.1
SkeletalMuscle21
Skin7.95
SmoothMuscle27.6
Spinalcord203.95
SubthalamicNucleus35.55
SuperiorCervicalGanglion16.8
TemporalLobe27.2
Testis25.15
TestisGermCell76.5
TestisIntersitial29.35
TestisLeydigCell20.25
TestisSeminiferousTubule30.65
Thalamus41.15
Thymus15.1
Thyroid22.3
Tongue21.25
Tonsil17.35
Trachea16.75
TrigeminalGanglion20.75
Uterus19.45
UterusCorpus14.35
WholeBlood17.25
Wholebrain51.8
colon134.35
pineal_day48.38
pineal_night33.14
retina55.5
small_intestine96.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P216200
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.37 ± 0.35
Basal Forebrain6.71 ± 0.16
Basal Part of Pons6.45 ± 0.33
Cerebellar Cortex6.23 ± 0.23
Cerebellar Nuclei6.66 ± 0.38
Claustrum6.05 ± 0.6
Epithalamus7.24 ± 0.53
Frontal Lobe6.51 ± 0.32
Globus Pallidus7.05 ± 0.2
Hypothalamus6.77 ± 0.28
Insula6.33 ± 0.36
Limbic Lobe6.44 ± 0.37
Mesencephalon6.42 ± 0.3
Myelencephalon6.51 ± 0.42
Occipital Lobe6.41 ± 0.38
Parietal Lobe6.48 ± 0.36
Pontine Tegmentum6.53 ± 0.42
Striatum6.95 ± 0.3
Subthalamus6.22 ± 0.5
Temporal Lobe6.43 ± 0.29
Thalamus6.59 ± 0.26
White Matter6.74 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Agpat5CBCerebellum19.9
54.55
Agpat5CTXCerebral cortex40.61
34.34
Agpat5HIPHippocampal region43.91
57.07
Agpat5HPFHippocampal formation50.66
57.12
Agpat5HYHypothalamus47.82
40.66
Agpat5LSXLateral septal complex9.32
7.01
Agpat5MBMidbrain25.27
27.53
Agpat5MYMedulla26.19
38.34
Agpat5OLFOlfactory bulb49.76
46.8
Agpat5PPons29.01
38.06
Agpat5PALPallidum28.88
29.67
Agpat5RHPRetrohippocampal region69.18
63.08
Agpat5sAMYStriatum-like amygdalar nuclei41.64
32.83
Agpat5STRStriatum20.83
17.15
Agpat5STRdStriatum dorsal region13.79
11.51
Agpat5STRvStriatum ventral region36.37
28.75
Agpat5THThalamus54.57
59.63
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00005261 21 156 176 LQSYVDAGTPMYLVIFPEGTR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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