Annotation Detail for GIMAP5
Basic Information Top
| Gene Symbol: | GIMAP5 ( FLJ11296,HIMAP3,IAN4,IAN4L1,IAN5,IMAP3,hIAN5 ) |
|---|---|
| Gene Full Name: | GTPase, IMAP family member 5 |
| Band: | 7q36.1 |
| Quick Links | Entrez ID:55340; OMIM: 608086; Uniprot ID:GIMA5_HUMAN; ENSEMBL ID: ENSG00000196329; HGNC ID: 18005 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.647087
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 17 / 564012 | 30 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 6 / 55556 | 107 |  |
| adult | 96 / 1939121 | 49 | |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 15 / 1939121 | 7 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 171 / 3360307 | 50 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 32 / 3360307 | 9 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 20 / 123478 | 161 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 31 / 1100989 | 28 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 5 / 211054 | 23 | |
| heart | 6 / 89626 | 66 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 12 / 207743 | 57 | |
| lung | 18 / 336974 | 53 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 15 / 41328 | 362 |  |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 25 / 280825 | 89 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 7 / 96619 | 72 | |
| testis | 1 / 330442 | 3 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 4 / 51780 | 77 | |
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218805_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.75 | |
| Adipocyte | 5.25 | |
| AdrenalCortex | 5.65 | |
| Adrenalgland | 6.6 | |
| Amygdala | 6 | |
| Appendix | 5.35 | |
| AtrioventricularNode | 3.9 | |
| BDCA4+_DentriticCells | 5.9 | |
| Bonemarrow | 6.85 | |
| BronchialEpithelialCells | 5.25 | |
| CD105+_Endothelial | 5.35 | |
| CD14+_Monocytes | 42.8 | |
| CD19+_BCells(neg._sel.) | 5.7 | |
| CD33+_Myeloid | 6.95 | |
| CD34+ | 3.9 | |
| CD4+_Tcells | 737.65 | |
| CD56+_NKCells | 90.2 | |
| CD71+_EarlyErythroid | 4.95 | |
| CD8+_Tcells | 565.15 | |
| CardiacMyocytes | 6.6 | |
| Caudatenucleus | 5.85 | |
| Cerebellum | 5.65 | |
| CerebellumPeduncles | 6.05 | |
| CiliaryGanglion | 3.65 | |
| CingulateCortex | 5.45 | |
| Colorectaladenocarcinoma | 5.35 | |
| DorsalRootGanglion | 4 | |
| FetalThyroid | 10.55 | |
| Fetalbrain | 5.4 | |
| Fetalliver | 6.35 | |
| Fetallung | 14.05 | |
| GlobusPallidus | 3.9 | |
| Heart | 23.1 | |
| Hypothalamus | 6.05 | |
| Kidney | 5.25 | |
| Leukemia_chronicMyelogenousK-562 | 4.8 | |
| Leukemia_promyelocytic-HL-60 | 4.75 | |
| Leukemialymphoblastic(MOLT-4) | 5.95 | |
| Liver | 11.3 | |
| Lung | 23.6 | |
| Lymphnode | 46.15 | |
| Lymphoma_burkitts(Daudi) | 6.7 | |
| Lymphoma_burkitts(Raji) | 7.35 | |
| MedullaOblongata | 5.45 | |
| OccipitalLobe | 4.85 | |
| OlfactoryBulb | 6.85 | |
| Ovary | 3.7 | |
| Pancreas | 4.25 | |
| PancreaticIslet | 5.75 | |
| ParietalLobe | 5.6 | |
| Pituitary | 8.35 | |
| Placenta | 12.8 | |
| Pons | 5.65 | |
| PrefrontalCortex | 7.45 | |
| Prostate | 6.6 | |
| Salivarygland | 4.3 | |
| SkeletalMuscle | 6 | |
| Skin | 3.9 | |
| SmoothMuscle | 6.05 | |
| Spinalcord | 11.45 | |
| SubthalamicNucleus | 4.8 | |
| SuperiorCervicalGanglion | 8.1 | |
| TemporalLobe | 4.85 | |
| Testis | 4.65 | |
| TestisGermCell | 4.55 | |
| TestisIntersitial | 4.45 | |
| TestisLeydigCell | 5.25 | |
| TestisSeminiferousTubule | 4.6 | |
| Thalamus | 5.45 | |
| Thymus | 7.35 | |
| Thyroid | 7.55 | |
| Tongue | 5.2 | |
| Tonsil | 13.4 | |
| Trachea | 6.6 | |
| TrigeminalGanglion | 5.2 | |
| Uterus | 4.8 | |
| UterusCorpus | 4.75 | |
| WholeBlood | 119.05 | |
| Wholebrain | 4.55 | |
| colon | 5.35 | |
| pineal_day | 6.68 | |
| pineal_night | 6.04 | |
| retina | 15.875 | |
| small_intestine | 8.3 | |
- Probe name: CUST_4782_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.31 ± 1.05 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.87 ± 0.21 | |
| Basal Part of Pons | 1.52 ± 0.4 | |
| Cerebellar Cortex | 1.71 ± 0.6 | |
| Cerebellar Nuclei | 2.21 ± 0.77 | |
| Claustrum | 2.79 ± 0.95 | |
| Epithalamus | 1.63 ± 0.75 | |
| Frontal Lobe | 1.73 ± 0.73 | |
| Globus Pallidus | 2.51 ± 0.35 | |
| Hypothalamus | 1.88 ± 0.74 | |
| Insula | 1.83 ± 0.44 | |
| Limbic Lobe | 1.86 ± 0.59 | |
| Mesencephalon | 2.1 ± 0.77 | |
| Myelencephalon | 1.9 ± 0.69 | |
| Occipital Lobe | 1.97 ± 0.58 | |
| Parietal Lobe | 1.9 ± 0.68 | |
| Pontine Tegmentum | 1.96 ± 0.66 | |
| Striatum | 2.02 ± 0.55 | |
| Subthalamus | 2.01 ± 0.65 | |
| Temporal Lobe | 1.8 ± 0.67 | |
| Thalamus | 1.88 ± 0.64 | |
| White Matter | 2.63 ± 0.6 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gimap5 | CB | Cerebellum | 3.81 | |
| 4.88 | | |||
| Gimap5 | CTX | Cerebral cortex | 1.96 | |
| 2.44 | | |||
| Gimap5 | HIP | Hippocampal region | 1.69 | |
| 1.68 | | |||
| Gimap5 | HPF | Hippocampal formation | 1.27 | |
| 1.18 | | |||
| Gimap5 | HY | Hypothalamus | 0.61 | |
| 0.63 | | |||
| Gimap5 | LSX | Lateral septal complex | 0.16 | |
| 0.19 | | |||
| Gimap5 | MB | Midbrain | 0.83 | |
| 1.08 | | |||
| Gimap5 | MY | Medulla | 4.99 | |
| 5.17 | | |||
| Gimap5 | OLF | Olfactory bulb | 1.71 | |
| 2.44 | | |||
| Gimap5 | P | Pons | 1.77 | |
| 2.13 | | |||
| Gimap5 | PAL | Pallidum | 0.83 | |
| 0.81 | | |||
| Gimap5 | RHP | Retrohippocampal region | 0.48 | |
| 0.4 | | |||
| Gimap5 | sAMY | Striatum-like amygdalar nuclei | 0.18 | |
| 0.2 | | |||
| Gimap5 | STR | Striatum | 0.62 | |
| 0.63 | | |||
| Gimap5 | STRd | Striatum dorsal region | 0.76 | |
| 0.85 | | |||
| Gimap5 | STRv | Striatum ventral region | 0.67 | |
| 0.39 | | |||
| Gimap5 | TH | Thalamus | 1.1 | |
| 1.23 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00012049 | 14 | 184 | 197 | YCAFNNWGSVEEQR | Peptide Atlas |