Annotation Detail for STRBP
Basic Information Top
| Gene Symbol: | STRBP ( DKFZp434N214,FLJ11307,FLJ14223,FLJ14984,FLJ21960,ILF3L,MGC21529,MGC3405,SPNR,p74 ) |
|---|---|
| Gene Full Name: | spermatid perinuclear RNA binding protein |
| Band: | 9q33.1-q33.3 |
| Quick Links | Entrez ID:55342; OMIM: 611138; Uniprot ID:STRBP_HUMAN; ENSEMBL ID: ENSG00000165209; HGNC ID: 16462 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.694157
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 24 / 564012 | 42 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 82 / 1939121 | 42 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 19 / 114246 | 166 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 19 / 263845 | 72 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 10 / 95842 | 104 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 119 / 3360307 | 35 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 9 / 102680 | 87 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 16 / 125191 | 127 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 2 / 29757 | 67 | |
| blood | 5 / 123478 | 40 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 14 / 149255 | 93 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 1 / 89626 | 11 | |
| intestine | 24 / 234472 | 102 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 12 / 336974 | 35 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 16 / 91610 | 174 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 4 / 210574 | 18 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 28 / 330442 | 84 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P398016
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.66 ± 0.29 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.52 ± 0.43 | |
| Basal Part of Pons | 7.41 ± 0.33 | |
| Cerebellar Cortex | 7.16 ± 0.16 | |
| Cerebellar Nuclei | 6.89 ± 0.32 | |
| Claustrum | 7.11 ± 0.31 | |
| Epithalamus | 7.59 ± 0.49 | |
| Frontal Lobe | 7.06 ± 0.41 | |
| Globus Pallidus | 5.8 ± 0.17 | |
| Hypothalamus | 6.36 ± 0.3 | |
| Insula | 6.89 ± 0.24 | |
| Limbic Lobe | 6.91 ± 0.51 | |
| Mesencephalon | 6.7 ± 0.39 | |
| Myelencephalon | 6.83 ± 0.5 | |
| Occipital Lobe | 7.38 ± 0.27 | |
| Parietal Lobe | 7.2 ± 0.34 | |
| Pontine Tegmentum | 6.93 ± 0.3 | |
| Striatum | 6.46 ± 0.32 | |
| Subthalamus | 7.15 ± 0.3 | |
| Temporal Lobe | 6.92 ± 0.4 | |
| Thalamus | 7.07 ± 0.29 | |
| White Matter | 5.46 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Strbp | CB | Cerebellum | 97.31 | |
| 100 | | |||
| Strbp | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Strbp | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Strbp | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Strbp | HY | Hypothalamus | 83.56 | |
| 81.22 | | |||
| Strbp | LSX | Lateral septal complex | 96.71 | |
| 77.04 | | |||
| Strbp | MB | Midbrain | 100 | |
| 100 | | |||
| Strbp | MY | Medulla | 100 | |
| 100 | | |||
| Strbp | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Strbp | P | Pons | 91.61 | |
| 100 | | |||
| Strbp | PAL | Pallidum | 89.39 | |
| 97.79 | | |||
| Strbp | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Strbp | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Strbp | STR | Striatum | 100 | |
| 88.78 | | |||
| Strbp | STRd | Striatum dorsal region | 100 | |
| 90.75 | | |||
| Strbp | STRv | Striatum ventral region | 100 | |
| 84.32 | | |||
| Strbp | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003192 | 10 | 240 | 249 | GWPLELICEK | Peptide Atlas |