AutismKB 2.0

Annotation Detail for SLC35C1


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Basic Information Top
Gene Symbol:SLC35C1 ( CDG2C,FLJ11320,FLJ14841,FUCT1 )
Gene Full Name: solute carrier family 35, member C1
Band: 11p11.2
Quick LinksEntrez ID:55343; OMIM: 605881; Uniprot ID:FUCT1_HUMAN; ENSEMBL ID: ENSG00000181830; HGNC ID: 20197
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus13 / 56401223
neonate1 / 3109732
infant1 / 2362042
juvenile1 / 5555617
adult71 / 193912136
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor18 / 26384568
glioma2 / 10688318
head and neck tumor7 / 13630251
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal84 / 336030724
ovarian tumor9 / 76682117
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor8 / 12494964
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood7 / 12347856
bone0 / 716550 
bone marrow0 / 488010 
brain15 / 110098913
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine17 / 23447272
kidney9 / 21177742
larynx0 / 241450 
liver5 / 20774324
lung10 / 33697429
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary9 / 10205188
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta13 / 28082546
prostate3 / 18934515
salivary gland0 / 201550 
skin11 / 21057452
spleen1 / 5395218
stomach3 / 9661931
testis8 / 33044224
thymus1 / 8113112
thyroid5 / 47473105
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus8 / 23287834
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218485_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.2
Adipocyte5.75
AdrenalCortex5.1
Adrenalgland4.1
Amygdala5.1
Appendix4.9
AtrioventricularNode3.8
BDCA4+_DentriticCells5.85
Bonemarrow4.85
BronchialEpithelialCells4.85
CD105+_Endothelial5.45
CD14+_Monocytes5.3
CD19+_BCells(neg._sel.)5.25
CD33+_Myeloid6.45
CD34+6.25
CD4+_Tcells5.4
CD56+_NKCells6.8
CD71+_EarlyErythroid4.65
CD8+_Tcells4.9
CardiacMyocytes6.4
Caudatenucleus4.35
Cerebellum3.95
CerebellumPeduncles5.5
CiliaryGanglion3.45
CingulateCortex6
Colorectaladenocarcinoma7.5
DorsalRootGanglion3.7
FetalThyroid5.25
Fetalbrain4.85
Fetalliver4.2
Fetallung4.05
GlobusPallidus4.35
Heart6.3
Hypothalamus5.3
Kidney3.9
Leukemia_chronicMyelogenousK-5624.5
Leukemia_promyelocytic-HL-604.35
Leukemialymphoblastic(MOLT-4)3.9
Liver6.45
Lung5.4
Lymphnode4.2
Lymphoma_burkitts(Daudi)6.25
Lymphoma_burkitts(Raji)6.85
MedullaOblongata4.45
OccipitalLobe4.4
OlfactoryBulb3.9
Ovary3.25
Pancreas3.95
PancreaticIslet5.25
ParietalLobe5.1
Pituitary5.8
Placenta5.15
Pons4.65
PrefrontalCortex6.1
Prostate5.85
Salivarygland3.9
SkeletalMuscle5.85
Skin3.75
SmoothMuscle5.55
Spinalcord5.3
SubthalamicNucleus4.65
SuperiorCervicalGanglion5.55
TemporalLobe4.5
Testis4.25
TestisGermCell4.1
TestisIntersitial4.15
TestisLeydigCell4.85
TestisSeminiferousTubule4.45
Thalamus5
Thymus3.95
Thyroid6.25
Tongue4.8
Tonsil4.75
Trachea4.1
TrigeminalGanglion4.9
Uterus4.05
UterusCorpus4.4
WholeBlood5.4
Wholebrain4.2
colon4.95
pineal_day7.46
pineal_night6.42
retina5.925
small_intestine4.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11523_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.48 ± 0.68
Basal Forebrain3.33 ± 0.45
Basal Part of Pons3.37 ± 0.54
Cerebellar Cortex3.44 ± 0.5
Cerebellar Nuclei3.4 ± 0.53
Claustrum3.49 ± 0.6
Epithalamus3.05 ± 0.56
Frontal Lobe3.47 ± 0.52
Globus Pallidus3.06 ± 0.76
Hypothalamus3.31 ± 0.39
Insula3.47 ± 0.37
Limbic Lobe3.3 ± 0.56
Mesencephalon3.33 ± 0.61
Myelencephalon3.35 ± 0.59
Occipital Lobe3.26 ± 0.51
Parietal Lobe3.27 ± 0.58
Pontine Tegmentum3.28 ± 0.51
Striatum3.01 ± 0.57
Subthalamus3.46 ± 0.56
Temporal Lobe3.37 ± 0.5
Thalamus3.37 ± 0.52
White Matter2.62 ± 0.48
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc35c1CBCerebellum20.77
33.77
Slc35c1CTXCerebral cortex8.69
5.87
Slc35c1HIPHippocampal region7.18
6.43
Slc35c1HPFHippocampal formation7.65
6.39
Slc35c1HYHypothalamus1.12
0.88
Slc35c1LSXLateral septal complex1.51
1.16
Slc35c1MBMidbrain1.82
1.91
Slc35c1MYMedulla5.22
5.17
Slc35c1OLFOlfactory bulb11.29
8.17
Slc35c1PPons3.06
3.28
Slc35c1PALPallidum1.55
1.27
Slc35c1RHPRetrohippocampal region8.51
6.38
Slc35c1sAMYStriatum-like amygdalar nuclei1.61
1.28
Slc35c1STRStriatum2.31
1.8
Slc35c1STRdStriatum dorsal region2.21
1.72
Slc35c1STRvStriatum ventral region3.43
2.6
Slc35c1THThalamus3.27
2.91
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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