Annotation Detail for CHDH
Basic Information Top
| Gene Symbol: | CHDH ( - ) |
|---|---|
| Gene Full Name: | choline dehydrogenase |
| Band: | 3p21.1 |
| Quick Links | Entrez ID:55349; OMIM: NA; Uniprot ID:CHDH_HUMAN; ENSEMBL ID: ENSG00000016391; HGNC ID: 24288 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.126688
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 38 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 6 / 114246 | 52 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 88 / 3360307 | 26 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 47 / 211777 | 221 |  |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 6 / 20539 | 292 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P69293
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.42 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.25 ± 0.29 | |
| Basal Part of Pons | 4.65 ± 0.54 | |
| Cerebellar Cortex | 6.2 ± 0.59 | |
| Cerebellar Nuclei | 4.89 ± 0.74 | |
| Claustrum | 4.55 ± 0.72 | |
| Epithalamus | 5.99 ± 0.57 | |
| Frontal Lobe | 5.76 ± 0.56 | |
| Globus Pallidus | 6.7 ± 0.59 | |
| Hypothalamus | 5.8 ± 0.36 | |
| Insula | 5.63 ± 0.53 | |
| Limbic Lobe | 5.54 ± 0.71 | |
| Mesencephalon | 6.05 ± 0.7 | |
| Myelencephalon | 5.91 ± 0.71 | |
| Occipital Lobe | 5.98 ± 0.73 | |
| Parietal Lobe | 5.63 ± 0.69 | |
| Pontine Tegmentum | 5.88 ± 0.52 | |
| Striatum | 6.18 ± 0.69 | |
| Subthalamus | 5.31 ± 1.21 | |
| Temporal Lobe | 5.64 ± 0.5 | |
| Thalamus | 6.37 ± 0.58 | |
| White Matter | 5.08 ± 0.93 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Chdh | CB | Cerebellum | 3.97 | |
| 4.38 | | |||
| Chdh | CTX | Cerebral cortex | 1.77 | |
| 1.38 | | |||
| Chdh | HIP | Hippocampal region | 1.89 | |
| 1.77 | | |||
| Chdh | HPF | Hippocampal formation | 2.5 | |
| 2.07 | | |||
| Chdh | HY | Hypothalamus | 0.23 | |
| 0.39 | | |||
| Chdh | LSX | Lateral septal complex | 0.19 | |
| 0.39 | | |||
| Chdh | MB | Midbrain | 1.26 | |
| 1.72 | | |||
| Chdh | MY | Medulla | 1.83 | |
| 2.08 | | |||
| Chdh | OLF | Olfactory bulb | 4.39 | |
| 4.04 | | |||
| Chdh | P | Pons | 1.46 | |
| 2.02 | | |||
| Chdh | PAL | Pallidum | 1.07 | |
| 0.97 | | |||
| Chdh | RHP | Retrohippocampal region | 3.59 | |
| 2.54 | | |||
| Chdh | sAMY | Striatum-like amygdalar nuclei | 1.77 | |
| 1.59 | | |||
| Chdh | STR | Striatum | 1.72 | |
| 1.4 | | |||
| Chdh | STRd | Striatum dorsal region | 1.89 | |
| 1.54 | | |||
| Chdh | STRv | Striatum ventral region | 1.27 | |
| 0.96 | | |||
| Chdh | TH | Thalamus | 1.36 | |
| 1.77 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00008772 | 14 | 238 | 251 | WSAACAYLHPALSR | Peptide Atlas |