AutismKB 2.0

Annotation Detail for CSGALNACT2


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Basic Information Top
Gene Symbol:CSGALNACT2 ( CHGN2,DKFZp686H13226,FLJ43310,GALNACT-2,GALNACT2,MGC40204 )
Gene Full Name: chondroitin sulfate N-acetylgalactosaminyltransferase 2
Band: 10q11.21
Quick LinksEntrez ID:55454; OMIM: NA; Uniprot ID:CGAT2_HUMAN; ENSEMBL ID: ENSG00000169826; HGNC ID: 24292
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst0 / 623190 
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult65 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor8 / 26384530
glioma4 / 10688337
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia9 / 9584293
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal94 / 336030727
ovarian tumor4 / 7668252
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood11 / 12347889
bone0 / 716550 
bone marrow2 / 4880140
brain28 / 110098925
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye4 / 21105418
heart2 / 8962622
intestine6 / 23447225
kidney4 / 21177718
larynx0 / 241450 
liver2 / 2077439
lung6 / 33697417
lymph0 / 442700 
lymph node7 / 9161076
mammary gland9 / 15327158
mouth2 / 6705229
muscle0 / 1077150 
nerve0 / 157680 
ovary4 / 10205139
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta3 / 28082510
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach6 / 9661962
testis14 / 33044242
thymus3 / 8113136
thyroid2 / 4747342
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord0 / 136800 
uterus7 / 23287830
vascular8 / 51780154
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222235_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts20.8
Adipocyte11.55
AdrenalCortex15.3
Adrenalgland9.8
Amygdala23.85
Appendix21.25
AtrioventricularNode17.35
BDCA4+_DentriticCells75.6
Bonemarrow19.4
BronchialEpithelialCells11.9
CD105+_Endothelial14.75
CD14+_Monocytes184.05
CD19+_BCells(neg._sel.)37.15
CD33+_Myeloid282.6
CD34+40.8
CD4+_Tcells42.9
CD56+_NKCells111
CD71+_EarlyErythroid15.45
CD8+_Tcells120.9
CardiacMyocytes24.2
Caudatenucleus15.85
Cerebellum10.1
CerebellumPeduncles15.3
CiliaryGanglion22.7
CingulateCortex11.9
Colorectaladenocarcinoma11.85
DorsalRootGanglion16.6
FetalThyroid11.85
Fetalbrain48.6
Fetalliver10.45
Fetallung52.1
GlobusPallidus10.85
Heart19.35
Hypothalamus14.25
Kidney10.35
Leukemia_chronicMyelogenousK-56210.2
Leukemia_promyelocytic-HL-6010.85
Leukemialymphoblastic(MOLT-4)9.9
Liver18.65
Lung12.3
Lymphnode46.45
Lymphoma_burkitts(Daudi)20.55
Lymphoma_burkitts(Raji)20.1
MedullaOblongata10.25
OccipitalLobe10.7
OlfactoryBulb9.6
Ovary13.35
Pancreas10.3
PancreaticIslet14.25
ParietalLobe13.95
Pituitary16
Placenta11.9
Pons12.35
PrefrontalCortex13.2
Prostate14.85
Salivarygland11.45
SkeletalMuscle23.8
Skin14
SmoothMuscle54.5
Spinalcord17.45
SubthalamicNucleus11.6
SuperiorCervicalGanglion23.15
TemporalLobe10.8
Testis8.4
TestisGermCell9.2
TestisIntersitial11.05
TestisLeydigCell13.5
TestisSeminiferousTubule10.2
Thalamus12.2
Thymus11.05
Thyroid18.4
Tongue19.5
Tonsil16.65
Trachea9.8
TrigeminalGanglion19.05
Uterus39.35
UterusCorpus12.95
WholeBlood83.25
Wholebrain8.75
colon12.35
pineal_day15.94
pineal_night16.96
retina38.3
small_intestine12.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P161269
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.54 ± 0.66
Basal Forebrain4.18 ± 0.38
Basal Part of Pons4.66 ± 0.53
Cerebellar Cortex4.78 ± 0.33
Cerebellar Nuclei4.02 ± 0.63
Claustrum3.96 ± 0.72
Epithalamus4.45 ± 0.53
Frontal Lobe4.45 ± 0.43
Globus Pallidus4.21 ± 0.45
Hypothalamus4.27 ± 0.43
Insula4.41 ± 0.42
Limbic Lobe4.18 ± 0.6
Mesencephalon4.32 ± 0.55
Myelencephalon4.25 ± 0.55
Occipital Lobe4.05 ± 0.57
Parietal Lobe4.38 ± 0.48
Pontine Tegmentum4.26 ± 0.51
Striatum3.76 ± 0.55
Subthalamus4.58 ± 0.29
Temporal Lobe4.38 ± 0.46
Thalamus4.15 ± 0.58
White Matter4.3 ± 0.11
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Galnact2CBCerebellum6.05
7.22
Galnact2CTXCerebral cortex2.66
2.01
Galnact2HIPHippocampal region3.09
2.55
Galnact2HPFHippocampal formation2.95
2.3
Galnact2HYHypothalamus0.5
0.44
Galnact2LSXLateral septal complex0.31
0.21
Galnact2MBMidbrain1.8
1.81
Galnact2MYMedulla5.89
5.95
Galnact2OLFOlfactory bulb3.03
1.9
Galnact2PPons4.35
4.8
Galnact2PALPallidum0.95
0.71
Galnact2RHPRetrohippocampal region2.79
1.97
Galnact2sAMYStriatum-like amygdalar nuclei1.63
1.25
Galnact2STRStriatum1.39
0.99
Galnact2STRdStriatum dorsal region1.56
1.17
Galnact2STRvStriatum ventral region1.28
0.74
Galnact2THThalamus1.1
0.86
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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