AutismKB 2.0

Annotation Detail for CHST12


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Basic Information Top
Gene Symbol:CHST12 ( C4S-2,C4ST-2,C4ST2 )
Gene Full Name: carbohydrate (chondroitin 4) sulfotransferase 12
Band: 7p22.3
Quick LinksEntrez ID:55501; OMIM: 610129; Uniprot ID:CHSTC_HUMAN; ENSEMBL ID: ENSG00000136213; HGNC ID: 17423
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult42 / 193912121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor14 / 26384553
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia5 / 9584252
liver tumor0 / 963590 
lung tumor5 / 10312748
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal65 / 336030719
ovarian tumor5 / 7668265
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor9 / 12494972
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood9 / 12347872
bone4 / 7165555
bone marrow1 / 4880120
brain28 / 110098925
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine6 / 23447225
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung8 / 33697423
lymph1 / 4427022
lymph node0 / 916100 
mammary gland5 / 15327132
mouth0 / 670520 
muscle0 / 1077150 
nerve2 / 15768126
ovary10 / 10205197
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate1 / 1893455
salivary gland0 / 201550 
skin10 / 21057447
spleen6 / 53952111
stomach1 / 9661910
testis7 / 33044221
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218927_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts54.1
Adipocyte7.2
AdrenalCortex7
Adrenalgland5.5
Amygdala7.55
Appendix6.85
AtrioventricularNode5
BDCA4+_DentriticCells146
Bonemarrow17.35
BronchialEpithelialCells5.25
CD105+_Endothelial7.5
CD14+_Monocytes7.85
CD19+_BCells(neg._sel.)13.25
CD33+_Myeloid9.05
CD34+44.65
CD4+_Tcells38.85
CD56+_NKCells567.8
CD71+_EarlyErythroid7
CD8+_Tcells111.6
CardiacMyocytes9.3
Caudatenucleus3.9
Cerebellum5.95
CerebellumPeduncles8.15
CiliaryGanglion4.8
CingulateCortex7.35
Colorectaladenocarcinoma7.4
DorsalRootGanglion5.1
FetalThyroid8.75
Fetalbrain6.5
Fetalliver6.3
Fetallung9.9
GlobusPallidus3.4
Heart12.95
Hypothalamus7.5
Kidney5.4
Leukemia_chronicMyelogenousK-5626.5
Leukemia_promyelocytic-HL-605.5
Leukemialymphoblastic(MOLT-4)12.4
Liver8.25
Lung65.7
Lymphnode6.4
Lymphoma_burkitts(Daudi)7.05
Lymphoma_burkitts(Raji)24.6
MedullaOblongata6.7
OccipitalLobe4.5
OlfactoryBulb5.7
Ovary3
Pancreas5.55
PancreaticIslet6.8
ParietalLobe7.15
Pituitary6.1
Placenta7.6
Pons6.9
PrefrontalCortex9
Prostate11.35
Salivarygland5.75
SkeletalMuscle16.35
Skin5.25
SmoothMuscle24.7
Spinalcord7.45
SubthalamicNucleus5.15
SuperiorCervicalGanglion7.7
TemporalLobe6
Testis5.75
TestisGermCell4.75
TestisIntersitial4.3
TestisLeydigCell7.15
TestisSeminiferousTubule6.6
Thalamus6.45
Thymus6.35
Thyroid14.15
Tongue6.3
Tonsil5.9
Trachea6.1
TrigeminalGanglion7.05
Uterus7.8
UterusCorpus20.95
WholeBlood11.4
Wholebrain5.8
colon9.05
pineal_day15.8
pineal_night11.96
retina10.6
small_intestine8.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14796_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.37 ± 0.56
Basal Forebrain7.08 ± 0.37
Basal Part of Pons7.16 ± 0.53
Cerebellar Cortex6.74 ± 0.37
Cerebellar Nuclei7.17 ± 0.37
Claustrum7.66 ± 0.71
Epithalamus6.57 ± 0.81
Frontal Lobe7.07 ± 0.58
Globus Pallidus7.5 ± 0.45
Hypothalamus6.92 ± 0.43
Insula6.87 ± 0.41
Limbic Lobe7.16 ± 0.66
Mesencephalon7.22 ± 0.54
Myelencephalon7.13 ± 0.59
Occipital Lobe7.11 ± 0.75
Parietal Lobe6.95 ± 0.5
Pontine Tegmentum6.8 ± 0.47
Striatum7.06 ± 0.71
Subthalamus6.93 ± 0.8
Temporal Lobe6.94 ± 0.6
Thalamus7.09 ± 0.48
White Matter7.28 ± 0.49
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Chst12CBCerebellum99.34
100
Chst12CTXCerebral cortex100
100
Chst12HIPHippocampal region76.25
92.11
Chst12HPFHippocampal formation90.87
100
Chst12HYHypothalamus76.97
74.97
Chst12LSXLateral septal complex82.97
79.96
Chst12MBMidbrain87.38
90.98
Chst12MYMedulla97.44
100
Chst12OLFOlfactory bulb100
100
Chst12PPons93.33
100
Chst12PALPallidum77.19
78.59
Chst12RHPRetrohippocampal region100
100
Chst12sAMYStriatum-like amygdalar nuclei81.4
76.99
Chst12STRStriatum86.34
81.78
Chst12STRdStriatum dorsal region83.43
78.94
Chst12STRvStriatum ventral region99.5
92.15
Chst12THThalamus80.54
77.63
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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