AutismKB 2.0

Annotation Detail for TRIM36


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Basic Information Top
Gene Symbol:TRIM36 ( HAPRIN,RBCC728,RNF98 )
Gene Full Name: tripartite motif-containing 36
Band: 5q22.3
Quick LinksEntrez ID:55521; OMIM: 609317; Uniprot ID:TRI36_HUMAN; ENSEMBL ID: ENSG00000152503; HGNC ID: 16280
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult29 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor14 / 26384553
glioma1 / 1068839
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal137 / 336030740
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain57 / 110098951
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta1 / 2808253
prostate3 / 18934515
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis89 / 330442269
thymus0 / 811310 
thyroid5 / 47473105
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219736_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.1
Adipocyte8.65
AdrenalCortex11.8
Adrenalgland8
Amygdala135.75
Appendix13.5
AtrioventricularNode12.35
BDCA4+_DentriticCells8.95
Bonemarrow9.85
BronchialEpithelialCells8.2
CD105+_Endothelial9.2
CD14+_Monocytes9.6
CD19+_BCells(neg._sel.)9.2
CD33+_Myeloid10.9
CD34+10.2
CD4+_Tcells8.95
CD56+_NKCells9.55
CD71+_EarlyErythroid8.65
CD8+_Tcells7.2
CardiacMyocytes14.85
Caudatenucleus8.2
Cerebellum7.45
CerebellumPeduncles11.4
CiliaryGanglion12.35
CingulateCortex11.65
Colorectaladenocarcinoma8.9
DorsalRootGanglion9.85
FetalThyroid9.25
Fetalbrain41.25
Fetalliver7.95
Fetallung6.1
GlobusPallidus8.75
Heart16.3
Hypothalamus23.4
Kidney8.55
Leukemia_chronicMyelogenousK-5627.95
Leukemia_promyelocytic-HL-607.8
Leukemialymphoblastic(MOLT-4)6.75
Liver14
Lung9.65
Lymphnode6.85
Lymphoma_burkitts(Daudi)11.9
Lymphoma_burkitts(Raji)14.2
MedullaOblongata8.1
OccipitalLobe14.6
OlfactoryBulb6.95
Ovary6.85
Pancreas7.55
PancreaticIslet9.7
ParietalLobe11.35
Pituitary28.7
Placenta8.7
Pons9.2
PrefrontalCortex51.05
Prostate12.65
Salivarygland7.7
SkeletalMuscle15.25
Skin9.8
SmoothMuscle10
Spinalcord30.15
SubthalamicNucleus13.35
SuperiorCervicalGanglion19.55
TemporalLobe9.55
Testis7.65
TestisGermCell6.95
TestisIntersitial19.2
TestisLeydigCell9.6
TestisSeminiferousTubule7.7
Thalamus12.95
Thymus6.5
Thyroid9.5
Tongue10.35
Tonsil9
Trachea7.2
TrigeminalGanglion16.15
Uterus6.95
UterusCorpus12.65
WholeBlood9.6
Wholebrain9.25
colon9.45
pineal_day40.68
pineal_night21.44
retina14.025
small_intestine11.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P363134
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.73 ± 0.41
Basal Forebrain7.14 ± 0.53
Basal Part of Pons7.65 ± 0.4
Cerebellar Cortex6.34 ± 0.79
Cerebellar Nuclei6.55 ± 0.65
Claustrum8.2 ± 0.77
Epithalamus7.12 ± 0.59
Frontal Lobe7.61 ± 0.71
Globus Pallidus7.14 ± 1.16
Hypothalamus7.2 ± 0.54
Insula7.44 ± 0.28
Limbic Lobe8.04 ± 1
Mesencephalon7.4 ± 0.93
Myelencephalon7.42 ± 0.72
Occipital Lobe6.88 ± 0.87
Parietal Lobe7.56 ± 0.8
Pontine Tegmentum7.29 ± 0.93
Striatum6.21 ± 1.48
Subthalamus7.4 ± 0.39
Temporal Lobe7.43 ± 0.46
Thalamus7.44 ± 0.7
White Matter8.07 ± 0.63
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Trim36CBCerebellum3.29
4.82
Trim36CTXCerebral cortex1.15
1.3
Trim36HIPHippocampal region2.29
2.96
Trim36HPFHippocampal formation1.72
2.05
Trim36HYHypothalamus0.69
0.69
Trim36LSXLateral septal complex1.56
1.99
Trim36MBMidbrain2.4
2.97
Trim36MYMedulla10.55
14.39
Trim36OLFOlfactory bulb2.33
2.87
Trim36PPons7.71
10.73
Trim36PALPallidum1.43
1.7
Trim36RHPRetrohippocampal region1.01
1.05
Trim36sAMYStriatum-like amygdalar nuclei0.82
0.66
Trim36STRStriatum1.45
1.4
Trim36STRdStriatum dorsal region1.82
1.73
Trim36STRvStriatum ventral region0.59
0.54
Trim36THThalamus2.47
3.08
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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