Annotation Detail for SVOP
Basic Information Top
| Gene Symbol: | SVOP ( DKFZp761H039 ) |
|---|---|
| Gene Full Name: | SV2 related protein homolog (rat) |
| Band: | 12q24.11 |
| Quick Links | Entrez ID:55530; OMIM: 611699; Uniprot ID:SVOP_HUMAN; ENSEMBL ID: ENSG00000166111; HGNC ID: 25417 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.4221
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 25 / 564012 | 44 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 9 / 23620 | 381 |  |
| juvenile | 2 / 55556 | 35 | |
| adult | 18 / 1939121 | 9 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 14 / 263845 | 53 |  |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 273 / 3360307 | 81 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 9 / 125680 | 71 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 284 / 1100989 | 257 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_928_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.6 ± 0.69 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.23 ± 0.68 | |
| Basal Part of Pons | 5.71 ± 0.78 | |
| Cerebellar Cortex | 6.2 ± 0.3 | |
| Cerebellar Nuclei | 4.76 ± 0.4 | |
| Claustrum | 5.54 ± 0.58 | |
| Epithalamus | 4.97 ± 0.6 | |
| Frontal Lobe | 5.82 ± 0.56 | |
| Globus Pallidus | 3.08 ± 1.04 | |
| Hypothalamus | 5.29 ± 0.73 | |
| Insula | 6.07 ± 0.21 | |
| Limbic Lobe | 5.96 ± 0.74 | |
| Mesencephalon | 5.39 ± 0.68 | |
| Myelencephalon | 5.44 ± 0.66 | |
| Occipital Lobe | 4.97 ± 0.72 | |
| Parietal Lobe | 5.41 ± 0.67 | |
| Pontine Tegmentum | 5.36 ± 0.73 | |
| Striatum | 4.61 ± 0.79 | |
| Subthalamus | 5.44 ± 0.37 | |
| Temporal Lobe | 5.93 ± 0.51 | |
| Thalamus | 4.96 ± 0.77 | |
| White Matter | 3 ± 0.56 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Svop | CB | Cerebellum | 92.52 | |
| 100 | | |||
| Svop | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Svop | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Svop | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Svop | HY | Hypothalamus | 98.91 | |
| 100 | | |||
| Svop | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Svop | MB | Midbrain | 92.45 | |
| 100 | | |||
| Svop | MY | Medulla | 86.17 | |
| 100 | | |||
| Svop | OLF | Olfactory bulb | 99.8 | |
| 100 | | |||
| Svop | P | Pons | 77.93 | |
| 100 | | |||
| Svop | PAL | Pallidum | 79.11 | |
| 89.86 | | |||
| Svop | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Svop | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Svop | STR | Striatum | 99.1 | |
| 95.83 | | |||
| Svop | STRd | Striatum dorsal region | 81.22 | |
| 74.14 | | |||
| Svop | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Svop | TH | Thalamus | 55.27 | |
| 59.01 | |