Annotation Detail for RNPC3
Basic Information Top
| Gene Symbol: | RNPC3 ( FLJ20008,FLJ25070,KIAA183,RBM40,RNP ) |
|---|---|
| Gene Full Name: | RNA-binding region (RNP1, RRM) containing 3 |
| Band: | 1p21.1 |
| Quick Links | Entrez ID:55599; OMIM: NA; Uniprot ID:RBM40_HUMAN; ENSEMBL ID: ENSG00000185946; HGNC ID: 18666 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.632423
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 34 / 564012 | 60 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 56 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 157 / 3360307 | 46 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 3 / 29757 | 100 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 50 / 1100989 | 45 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 10 / 211054 | 47 | |
| heart | 2 / 89626 | 22 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 23 / 207743 | 110 | |
| lung | 5 / 336974 | 14 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 3 / 16585 | 180 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 8 / 330442 | 24 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 7 / 47473 | 147 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9048_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.43 ± 0.32 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 10.34 ± 0.15 | |
| Basal Part of Pons | 9.79 ± 0.19 | |
| Cerebellar Cortex | 10.23 ± 0.3 | |
| Cerebellar Nuclei | 9.81 ± 0.3 | |
| Claustrum | 10.42 ± 0.28 | |
| Epithalamus | 10.37 ± 0.29 | |
| Frontal Lobe | 9.98 ± 0.29 | |
| Globus Pallidus | 10.19 ± 0.18 | |
| Hypothalamus | 9.93 ± 0.26 | |
| Insula | 10.05 ± 0.22 | |
| Limbic Lobe | 10.23 ± 0.38 | |
| Mesencephalon | 10.23 ± 0.28 | |
| Myelencephalon | 10.16 ± 0.31 | |
| Occipital Lobe | 10.49 ± 0.27 | |
| Parietal Lobe | 10.2 ± 0.3 | |
| Pontine Tegmentum | 10.15 ± 0.35 | |
| Striatum | 10.57 ± 0.26 | |
| Subthalamus | 9.86 ± 0.19 | |
| Temporal Lobe | 10.1 ± 0.29 | |
| Thalamus | 10.13 ± 0.17 | |
| White Matter | 10.65 ± 0.24 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rnpc3 | CB | Cerebellum | 8.5 | |
| 13.73 | | |||
| Rnpc3 | CTX | Cerebral cortex | 3.92 | |
| 3.33 | | |||
| Rnpc3 | HIP | Hippocampal region | 14.81 | |
| 16.12 | | |||
| Rnpc3 | HPF | Hippocampal formation | 13.93 | |
| 14.01 | | |||
| Rnpc3 | HY | Hypothalamus | 21.1 | |
| 17.77 | | |||
| Rnpc3 | LSX | Lateral septal complex | 4.11 | |
| 4.49 | | |||
| Rnpc3 | MB | Midbrain | 2.88 | |
| 4.93 | | |||
| Rnpc3 | MY | Medulla | 1.33 | |
| 2.15 | | |||
| Rnpc3 | OLF | Olfactory bulb | 34.78 | |
| 32.42 | | |||
| Rnpc3 | P | Pons | 5.07 | |
| 9.42 | | |||
| Rnpc3 | PAL | Pallidum | 17.52 | |
| 14.52 | | |||
| Rnpc3 | RHP | Retrohippocampal region | 11.98 | |
| 10.73 | | |||
| Rnpc3 | sAMY | Striatum-like amygdalar nuclei | 43.44 | |
| 30.89 | | |||
| Rnpc3 | STR | Striatum | 13.35 | |
| 10.54 | | |||
| Rnpc3 | STRd | Striatum dorsal region | 8.66 | |
| 7.3 | | |||
| Rnpc3 | STRv | Striatum ventral region | 19.43 | |
| 13.77 | | |||
| Rnpc3 | TH | Thalamus | 7.09 | |
| 6.15 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00075316 | 18 | 347 | 364 | NHDLPATEVDASNIGFGK | Peptide Atlas |