AutismKB 2.0

Annotation Detail for DDX60


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Basic Information Top
Gene Symbol:DDX60 ( FLJ10787,FLJ20035 )
Gene Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
Band: 4q32.3
Quick LinksEntrez ID:55601; OMIM: NA; Uniprot ID:DDX60_HUMAN; ENSEMBL ID: ENSG00000137628; HGNC ID: 25942
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus7 / 56401212
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult71 / 193912136
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor7 / 26384526
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma4 / 7175555
non-neoplasia3 / 9725030
normal59 / 336030717
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor20 / 90257221
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood1 / 1234788
bone2 / 7165527
bone marrow2 / 4880140
brain8 / 11009897
cervix1 / 4817120
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine7 / 23447229
kidney3 / 21177714
larynx0 / 241450 
liver3 / 20774314
lung4 / 33697411
lymph0 / 442700 
lymph node4 / 9161043
mammary gland3 / 15327119
mouth1 / 6705214
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta11 / 28082539
prostate4 / 18934521
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach4 / 9661941
testis9 / 33044227
thymus5 / 8113161
thyroid1 / 4747321
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus28 / 232878120
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218986_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.2
Adipocyte15.2
AdrenalCortex25.55
Adrenalgland16.95
Amygdala14.75
Appendix36.2
AtrioventricularNode33.35
BDCA4+_DentriticCells17.25
Bonemarrow18.8
BronchialEpithelialCells13.7
CD105+_Endothelial41.65
CD14+_Monocytes26.05
CD19+_BCells(neg._sel.)20.5
CD33+_Myeloid40.9
CD34+20.4
CD4+_Tcells52.5
CD56+_NKCells56.6
CD71+_EarlyErythroid17.4
CD8+_Tcells38.3
CardiacMyocytes37.2
Caudatenucleus15.7
Cerebellum13.7
CerebellumPeduncles22.8
CiliaryGanglion23.05
CingulateCortex19.25
Colorectaladenocarcinoma14.55
DorsalRootGanglion25.4
FetalThyroid21.1
Fetalbrain15.65
Fetalliver15.35
Fetallung12.5
GlobusPallidus17.8
Heart33.6
Hypothalamus17.2
Kidney16.65
Leukemia_chronicMyelogenousK-56213.5
Leukemia_promyelocytic-HL-6013.7
Leukemialymphoblastic(MOLT-4)13.15
Liver29.95
Lung17.75
Lymphnode23
Lymphoma_burkitts(Daudi)23.1
Lymphoma_burkitts(Raji)28.85
MedullaOblongata14.75
OccipitalLobe15.1
OlfactoryBulb12.3
Ovary15.05
Pancreas16
PancreaticIslet18.7
ParietalLobe22.55
Pituitary20.5
Placenta14.55
Pons21.95
PrefrontalCortex17
Prostate18.85
Salivarygland18.1
SkeletalMuscle40.05
Skin20.2
SmoothMuscle19.2
Spinalcord16.1
SubthalamicNucleus20.95
SuperiorCervicalGanglion52.55
TemporalLobe18.4
Testis12.9
TestisGermCell12.2
TestisIntersitial17.4
TestisLeydigCell23
TestisSeminiferousTubule14.7
Thalamus18.45
Thymus12.3
Thyroid29.2
Tongue34.2
Tonsil25.15
Trachea14.1
TrigeminalGanglion43.85
Uterus16.2
UterusCorpus25.25
WholeBlood22.05
Wholebrain9.9
colon29.85
pineal_day21.4
pineal_night21.44
retina18.825
small_intestine16.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P41470
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.6 ± 0.72
Basal Forebrain3.57 ± 0.54
Basal Part of Pons3.06 ± 0.61
Cerebellar Cortex2.93 ± 0.5
Cerebellar Nuclei3.84 ± 0.7
Claustrum3.33 ± 0.66
Epithalamus4.56 ± 0.34
Frontal Lobe3.46 ± 0.68
Globus Pallidus5.11 ± 0.69
Hypothalamus3.63 ± 0.68
Insula3.27 ± 0.6
Limbic Lobe3.33 ± 0.72
Mesencephalon3.62 ± 0.71
Myelencephalon3.66 ± 0.74
Occipital Lobe3.69 ± 0.72
Parietal Lobe3.31 ± 0.81
Pontine Tegmentum3.62 ± 0.77
Striatum4.38 ± 0.49
Subthalamus3.77 ± 0.66
Temporal Lobe3.37 ± 0.77
Thalamus3.82 ± 0.61
White Matter4.26 ± 1.06
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp01429685 16 1603 1618 LETPNHVTLGTIGVNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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