AutismKB 2.0

Annotation Detail for ZNF407


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Basic Information Top
Gene Symbol:ZNF407 ( FLJ13839,FLJ20307,KIAA1703 )
Gene Full Name: zinc finger protein 407
Band: 18q23
Quick LinksEntrez ID:55628; OMIM: NA; Uniprot ID:ZN407_HUMAN; ENSEMBL ID: ENSG00000215421; HGNC ID: 19904
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult24 / 193912112
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal48 / 336030714
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain12 / 110098910
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung4 / 33697411
lymph0 / 442700 
lymph node7 / 9161076
mammary gland4 / 15327126
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate4 / 18934521
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus3 / 8113136
thyroid2 / 4747342
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220835_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.8
Adipocyte8.85
AdrenalCortex10.6
Adrenalgland8.2
Amygdala9.05
Appendix12.05
AtrioventricularNode11.25
BDCA4+_DentriticCells8.3
Bonemarrow10.6
BronchialEpithelialCells8.2
CD105+_Endothelial8.75
CD14+_Monocytes9.55
CD19+_BCells(neg._sel.)8.75
CD33+_Myeloid10.9
CD34+10.8
CD4+_Tcells8
CD56+_NKCells9.3
CD71+_EarlyErythroid8.4
CD8+_Tcells7.05
CardiacMyocytes17.25
Caudatenucleus7.9
Cerebellum7.25
CerebellumPeduncles12.4
CiliaryGanglion7.85
CingulateCortex9.55
Colorectaladenocarcinoma8.9
DorsalRootGanglion9
FetalThyroid8.85
Fetalbrain9.05
Fetalliver8.15
Fetallung6.75
GlobusPallidus7.25
Heart18.5
Hypothalamus9
Kidney8.45
Leukemia_chronicMyelogenousK-5628
Leukemia_promyelocytic-HL-607.7
Leukemialymphoblastic(MOLT-4)6.75
Liver15.95
Lung10.65
Lymphnode7.35
Lymphoma_burkitts(Daudi)11.9
Lymphoma_burkitts(Raji)14.9
MedullaOblongata7.8
OccipitalLobe7.85
OlfactoryBulb6.7
Ovary7.7
Pancreas7.6
PancreaticIslet9.5
ParietalLobe10.75
Pituitary10.2
Placenta7.75
Pons8.8
PrefrontalCortex10
Prostate10.1
Salivarygland7.2
SkeletalMuscle16.4
Skin7.9
SmoothMuscle10.05
Spinalcord9.35
SubthalamicNucleus8.85
SuperiorCervicalGanglion13.05
TemporalLobe8.15
Testis7.45
TestisGermCell7.45
TestisIntersitial7.35
TestisLeydigCell9.65
TestisSeminiferousTubule7.7
Thalamus9.05
Thymus6.75
Thyroid10.55
Tongue9.05
Tonsil8.85
Trachea7.2
TrigeminalGanglion10.5
Uterus7.9
UterusCorpus11.5
WholeBlood9.45
Wholebrain7.15
colon8.45
pineal_day9.98
pineal_night9.82
retina10.55
small_intestine8.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_13652_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.11 ± 0.38
Basal Forebrain6.02 ± 0.16
Basal Part of Pons6.28 ± 0.31
Cerebellar Cortex6.16 ± 0.27
Cerebellar Nuclei6.18 ± 0.3
Claustrum6.26 ± 0.58
Epithalamus6.12 ± 0.62
Frontal Lobe5.83 ± 0.35
Globus Pallidus6.06 ± 0.3
Hypothalamus5.61 ± 0.34
Insula5.72 ± 0.23
Limbic Lobe6.07 ± 0.39
Mesencephalon5.94 ± 0.32
Myelencephalon5.95 ± 0.33
Occipital Lobe6.4 ± 0.37
Parietal Lobe5.98 ± 0.32
Pontine Tegmentum5.94 ± 0.41
Striatum6.16 ± 0.38
Subthalamus6.31 ± 0.13
Temporal Lobe5.85 ± 0.33
Thalamus5.82 ± 0.28
White Matter6.33 ± 0.5
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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