AutismKB 2.0

Annotation Detail for BCAS4


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Basic Information Top
Gene Symbol:BCAS4 ( CNOL,FLJ20495 )
Gene Full Name: breast carcinoma amplified sequence 4
Band: 20q13.13
Quick LinksEntrez ID:55653; OMIM: 607471; Uniprot ID:BCAS4_HUMAN; ENSEMBL ID: ENSG00000124243; HGNC ID: 14367
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst4 / 6231964
fetus8 / 56401214
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult10 / 19391215
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma6 / 7175583
non-neoplasia0 / 972500 
normal34 / 336030710
ovarian tumor1 / 7668213
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood3 / 12347824
bone0 / 716550 
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye0 / 2110540 
heart2 / 8962622
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung6 / 33697417
lymph4 / 4427090
lymph node9 / 9161098
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220588_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.8
Adipocyte5.05
AdrenalCortex5.4
Adrenalgland4.3
Amygdala5.3
Appendix5.15
AtrioventricularNode3.95
BDCA4+_DentriticCells5.4
Bonemarrow5
BronchialEpithelialCells5
CD105+_Endothelial5.15
CD14+_Monocytes5.4
CD19+_BCells(neg._sel.)8.75
CD33+_Myeloid6.55
CD34+6.4
CD4+_Tcells5.55
CD56+_NKCells6.05
CD71+_EarlyErythroid4.75
CD8+_Tcells6.55
CardiacMyocytes6.7
Caudatenucleus4.55
Cerebellum4.05
CerebellumPeduncles5.8
CiliaryGanglion3.65
CingulateCortex5.2
Colorectaladenocarcinoma5.8
DorsalRootGanglion3.95
FetalThyroid4.9
Fetalbrain5.05
Fetalliver4.45
Fetallung4.15
GlobusPallidus3.75
Heart6.7
Hypothalamus5.5
Kidney4.15
Leukemia_chronicMyelogenousK-5624.6
Leukemia_promyelocytic-HL-604.55
Leukemialymphoblastic(MOLT-4)4.1
Liver6.75
Lung5.55
Lymphnode4.8
Lymphoma_burkitts(Daudi)15.25
Lymphoma_burkitts(Raji)23
MedullaOblongata4.65
OccipitalLobe4.6
OlfactoryBulb3.95
Ovary3.4
Pancreas4.15
PancreaticIslet5.45
ParietalLobe5.45
Pituitary5.85
Placenta5.2
Pons4.85
PrefrontalCortex6.25
Prostate5.95
Salivarygland4.1
SkeletalMuscle6.05
Skin3.95
SmoothMuscle6.15
Spinalcord5.45
SubthalamicNucleus4.7
SuperiorCervicalGanglion7.35
TemporalLobe4.6
Testis4.4
TestisGermCell4.2
TestisIntersitial4.25
TestisLeydigCell5.05
TestisSeminiferousTubule4.4
Thalamus5.15
Thymus4.45
Thyroid6.35
Tongue5
Tonsil6.85
Trachea4.25
TrigeminalGanglion5.15
Uterus4.15
UterusCorpus4.6
WholeBlood5.55
Wholebrain4.95
colon5.05
pineal_day6.34
pineal_night6.2
retina6.35
small_intestine4.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P143492
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.39 ± 0.66
Basal Forebrain5.2 ± 0.29
Basal Part of Pons5.37 ± 0.43
Cerebellar Cortex5.4 ± 0.43
Cerebellar Nuclei4.68 ± 0.46
Claustrum5.08 ± 0.74
Epithalamus4.98 ± 0.3
Frontal Lobe5.24 ± 0.52
Globus Pallidus4.45 ± 0.42
Hypothalamus5.07 ± 0.56
Insula5.03 ± 0.54
Limbic Lobe6.03 ± 0.7
Mesencephalon5.34 ± 0.61
Myelencephalon5.3 ± 0.57
Occipital Lobe6.04 ± 0.59
Parietal Lobe5.48 ± 0.5
Pontine Tegmentum5.32 ± 0.6
Striatum5.97 ± 0.51
Subthalamus4.69 ± 0.34
Temporal Lobe5.21 ± 0.49
Thalamus5.05 ± 0.45
White Matter3.19 ± 0.69
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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