AutismKB 2.0

Annotation Detail for URGCP


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Basic Information Top
Gene Symbol:URGCP ( DKFZp666G166,DKFZp686O0457,URG4 )
Gene Full Name: upregulator of cell proliferation
Band: 7p13
Quick LinksEntrez ID:55665; OMIM: 610337; Uniprot ID:URGCP_HUMAN; ENSEMBL ID: ENSG00000106608; HGNC ID: 30890
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst3 / 6231948
fetus27 / 56401247
neonate3 / 3109796
infant0 / 236200 
juvenile3 / 5555653
adult108 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor18 / 26384568
glioma8 / 10688374
head and neck tumor11 / 13630280
kidney tumor5 / 6895972
leukemia2 / 9584220
liver tumor3 / 9635931
lung tumor8 / 10312777
lymphoma4 / 7175555
non-neoplasia8 / 9725082
normal236 / 336030770
ovarian tumor1 / 7668213
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer4 / 10268038
retinoblastoma2 / 4635643
skin tumor10 / 12494980
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood3 / 12347824
bone8 / 71655111
bone marrow0 / 488010 
brain133 / 1100989120
cervix2 / 4817141
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye16 / 21105475
heart4 / 8962644
intestine18 / 23447276
kidney15 / 21177770
larynx1 / 2414541
liver5 / 20774324
lung31 / 33697491
lymph4 / 4427090
lymph node0 / 916100 
mammary gland7 / 15327145
mouth7 / 67052104
muscle2 / 10771518
nerve3 / 15768190
ovary1 / 1020519
pancreas10 / 21481246
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta15 / 28082553
prostate15 / 18934579
salivary gland1 / 2015549
skin14 / 21057466
spleen2 / 5395237
stomach3 / 9661931
testis32 / 33044296
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea7 / 52413133
umbilical cord1 / 1368073
uterus10 / 23287842
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218601_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.85
Adipocyte5.25
AdrenalCortex16.9
Adrenalgland23.9
Amygdala13.2
Appendix5.25
AtrioventricularNode3.25
BDCA4+_DentriticCells6.1
Bonemarrow5.2
BronchialEpithelialCells5.9
CD105+_Endothelial6.05
CD14+_Monocytes6.6
CD19+_BCells(neg._sel.)5.25
CD33+_Myeloid6.7
CD34+12.2
CD4+_Tcells7.65
CD56+_NKCells10.6
CD71+_EarlyErythroid5.05
CD8+_Tcells7.3
CardiacMyocytes7.25
Caudatenucleus8.65
Cerebellum24.35
CerebellumPeduncles21.55
CiliaryGanglion3.3
CingulateCortex34.6
Colorectaladenocarcinoma21.75
DorsalRootGanglion2.55
FetalThyroid6.65
Fetalbrain13.05
Fetalliver3.9
Fetallung4.5
GlobusPallidus4.2
Heart15.15
Hypothalamus21.7
Kidney16.45
Leukemia_chronicMyelogenousK-5624.8
Leukemia_promyelocytic-HL-605.15
Leukemialymphoblastic(MOLT-4)10.2
Liver7.65
Lung16.65
Lymphnode6.7
Lymphoma_burkitts(Daudi)7.2
Lymphoma_burkitts(Raji)22.2
MedullaOblongata10.7
OccipitalLobe7.4
OlfactoryBulb3.95
Ovary2.6
Pancreas10.8
PancreaticIslet6.25
ParietalLobe7.2
Pituitary8.1
Placenta5.85
Pons12.45
PrefrontalCortex40.15
Prostate23.1
Salivarygland4.35
SkeletalMuscle6.65
Skin3.55
SmoothMuscle6.55
Spinalcord6.95
SubthalamicNucleus5.15
SuperiorCervicalGanglion6.35
TemporalLobe8.4
Testis4.8
TestisGermCell4.5
TestisIntersitial4.45
TestisLeydigCell4.7
TestisSeminiferousTubule4.55
Thalamus11.45
Thymus4.35
Thyroid14.35
Tongue5.35
Tonsil4.5
Trachea3.85
TrigeminalGanglion5
Uterus5.15
UterusCorpus6.15
WholeBlood5.55
Wholebrain52.65
colon7.05
pineal_day30
pineal_night18.4
retina19.575
small_intestine10.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P31489
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.5 ± 0.29
Basal Forebrain7.22 ± 0.18
Basal Part of Pons7.48 ± 0.26
Cerebellar Cortex7.48 ± 0.24
Cerebellar Nuclei6.92 ± 0.35
Claustrum7.36 ± 0.43
Epithalamus6.81 ± 0.22
Frontal Lobe7.18 ± 0.3
Globus Pallidus6.72 ± 0.19
Hypothalamus7.04 ± 0.19
Insula7.21 ± 0.32
Limbic Lobe7.47 ± 0.36
Mesencephalon7.16 ± 0.35
Myelencephalon7.25 ± 0.31
Occipital Lobe7.58 ± 0.33
Parietal Lobe7.34 ± 0.3
Pontine Tegmentum7.2 ± 0.29
Striatum7.06 ± 0.3
Subthalamus6.74 ± 0.47
Temporal Lobe7.34 ± 0.28
Thalamus7.15 ± 0.33
White Matter6.75 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2010005J08RikCBCerebellum33.28
39.82
2010005J08RikCTXCerebral cortex93.78
77.76
2010005J08RikHIPHippocampal region51.42
85.8
2010005J08RikHPFHippocampal formation62.35
78.12
2010005J08RikHYHypothalamus52.77
45.88
2010005J08RikLSXLateral septal complex76.47
60.41
2010005J08RikMBMidbrain52.39
51.15
2010005J08RikMYMedulla63.82
72.97
2010005J08RikOLFOlfactory bulb77.71
71.86
2010005J08RikPPons49.48
55.62
2010005J08RikPALPallidum63.35
62.66
2010005J08RikRHPRetrohippocampal region81.34
71.62
2010005J08RiksAMYStriatum-like amygdalar nuclei76.48
61.53
2010005J08RikSTRStriatum71.51
55.6
2010005J08RikSTRdStriatum dorsal region71.17
55.99
2010005J08RikSTRvStriatum ventral region70.98
52
2010005J08RikTHThalamus51.01
47.25
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00527020 18 10 27 YGDGTNEAQDNDFPTVER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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