Annotation Detail for C9orf86
Basic Information Top
| Gene Symbol: | C9orf86 ( FLJ10101,FLJ13045,Parf,RBEL1,bA216L13.9,pp8875 ) |
|---|---|
| Gene Full Name: | chromosome 9 open reading frame 86 |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:55684; OMIM: 610615; Uniprot ID:PARF_HUMAN; ENSEMBL ID: ENSG00000196642; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.370555
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 12 / 62319 | 192 | |
| fetus | 25 / 564012 | 44 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 175 / 1939121 | 90 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 12 / 94178 | 127 | |
| cervical tumor | 7 / 34366 | 203 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 15 / 119369 | 125 | |
| germ cell tumor | 38 / 263845 | 144 | |
| glioma | 15 / 106883 | 140 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 17 / 68959 | 246 | |
| leukemia | 9 / 95842 | 93 | |
| liver tumor | 15 / 96359 | 155 | |
| lung tumor | 27 / 103127 | 261 | |
| lymphoma | 30 / 71755 | 418 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 258 / 3360307 | 76 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 13 / 104616 | 124 | |
| primitive neuroectodermal tumor of the CNS | 21 / 125680 | 167 | |
| prostate cancer | 19 / 102680 | 185 | |
| retinoblastoma | 11 / 46356 | 237 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 18 / 125191 | 143 | |
| uterine tumor | 7 / 90257 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 7 / 40015 | 174 | |
| bladder | 0 / 29757 | 0 | |
| blood | 8 / 123478 | 64 | |
| bone | 11 / 71655 | 153 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 89 / 1100989 | 80 | |
| cervix | 10 / 48171 | 207 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 39 / 215722 | 180 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 26 / 211054 | 123 | |
| heart | 2 / 89626 | 22 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 23 / 211777 | 108 | |
| larynx | 0 / 24145 | 0 | |
| liver | 37 / 207743 | 178 | |
| lung | 40 / 336974 | 118 | |
| lymph | 29 / 44270 | 655 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 20 / 153271 | 130 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 15 / 107715 | 139 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 17 / 102051 | 166 | |
| pancreas | 21 / 214812 | 97 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 35 / 280825 | 124 | |
| prostate | 25 / 189345 | 132 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 15 / 210574 | 71 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 19 / 330442 | 57 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 18 / 232878 | 77 | |
| vascular | 4 / 51780 | 77 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219828_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 7.4 | |
| Adipocyte | 4.1 | |
| AdrenalCortex | 4.3 | |
| Adrenalgland | 3.45 | |
| Amygdala | 4.2 | |
| Appendix | 5.1 | |
| AtrioventricularNode | 3.05 | |
| BDCA4+_DentriticCells | 5.55 | |
| Bonemarrow | 4.15 | |
| BronchialEpithelialCells | 4.3 | |
| CD105+_Endothelial | 5.85 | |
| CD14+_Monocytes | 4.3 | |
| CD19+_BCells(neg._sel.) | 4.45 | |
| CD33+_Myeloid | 5.2 | |
| CD34+ | 5.4 | |
| CD4+_Tcells | 6.35 | |
| CD56+_NKCells | 5.1 | |
| CD71+_EarlyErythroid | 23.6 | |
| CD8+_Tcells | 5.1 | |
| CardiacMyocytes | 5.3 | |
| Caudatenucleus | 3.7 | |
| Cerebellum | 3.35 | |
| CerebellumPeduncles | 4.7 | |
| CiliaryGanglion | 2.85 | |
| CingulateCortex | 4.2 | |
| Colorectaladenocarcinoma | 4.15 | |
| DorsalRootGanglion | 3.1 | |
| FetalThyroid | 4.05 | |
| Fetalbrain | 4.05 | |
| Fetalliver | 4.75 | |
| Fetallung | 3.5 | |
| GlobusPallidus | 3 | |
| Heart | 5.15 | |
| Hypothalamus | 4.45 | |
| Kidney | 3.4 | |
| Leukemia_chronicMyelogenousK-562 | 3.85 | |
| Leukemia_promyelocytic-HL-60 | 3.65 | |
| Leukemialymphoblastic(MOLT-4) | 3.35 | |
| Liver | 5.5 | |
| Lung | 4.6 | |
| Lymphnode | 3.7 | |
| Lymphoma_burkitts(Daudi) | 5.25 | |
| Lymphoma_burkitts(Raji) | 5.85 | |
| MedullaOblongata | 3.8 | |
| OccipitalLobe | 3.6 | |
| OlfactoryBulb | 3.3 | |
| Ovary | 2.75 | |
| Pancreas | 3.3 | |
| PancreaticIslet | 4.45 | |
| ParietalLobe | 4.3 | |
| Pituitary | 4.85 | |
| Placenta | 4.3 | |
| Pons | 3.9 | |
| PrefrontalCortex | 5.2 | |
| Prostate | 4.95 | |
| Salivarygland | 3.5 | |
| SkeletalMuscle | 4.9 | |
| Skin | 3.1 | |
| SmoothMuscle | 4.7 | |
| Spinalcord | 4.4 | |
| SubthalamicNucleus | 3.7 | |
| SuperiorCervicalGanglion | 4.75 | |
| TemporalLobe | 3.75 | |
| Testis | 3.6 | |
| TestisGermCell | 3.5 | |
| TestisIntersitial | 3.45 | |
| TestisLeydigCell | 4.05 | |
| TestisSeminiferousTubule | 3.5 | |
| Thalamus | 4.15 | |
| Thymus | 3.4 | |
| Thyroid | 5.25 | |
| Tongue | 4.05 | |
| Tonsil | 4 | |
| Trachea | 3.85 | |
| TrigeminalGanglion | 4.2 | |
| Uterus | 3.45 | |
| UterusCorpus | 4.2 | |
| WholeBlood | 4.5 | |
| Wholebrain | 3.6 | |
| colon | 4.2 | |
| pineal_day | 6.58 | |
| pineal_night | 5.38 | |
| retina | 5 | |
| small_intestine | 4 | |
- Probe name: A_24_P477102
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.6 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.89 ± 0.31 | |
| Basal Part of Pons | 7.25 ± 0.48 | |
| Cerebellar Cortex | 7.05 ± 0.43 | |
| Cerebellar Nuclei | 6.64 ± 0.59 | |
| Claustrum | 6.43 ± 0.73 | |
| Epithalamus | 6.9 ± 0.59 | |
| Frontal Lobe | 6.84 ± 0.45 | |
| Globus Pallidus | 6.43 ± 0.47 | |
| Hypothalamus | 6.63 ± 0.47 | |
| Insula | 6.85 ± 0.41 | |
| Limbic Lobe | 6.8 ± 0.44 | |
| Mesencephalon | 6.73 ± 0.39 | |
| Myelencephalon | 6.88 ± 0.45 | |
| Occipital Lobe | 6.79 ± 0.34 | |
| Parietal Lobe | 6.87 ± 0.46 | |
| Pontine Tegmentum | 6.74 ± 0.42 | |
| Striatum | 7.26 ± 0.4 | |
| Subthalamus | 6.51 ± 0.83 | |
| Temporal Lobe | 6.98 ± 0.34 | |
| Thalamus | 6.9 ± 0.43 | |
| White Matter | 6.59 ± 0.24 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| B230208H17Rik | CB | Cerebellum | 66.81 | |
| 100 | | |||
| B230208H17Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| B230208H17Rik | HIP | Hippocampal region | 100 | |
| 100 | | |||
| B230208H17Rik | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| B230208H17Rik | HY | Hypothalamus | 84.59 | |
| 73.45 | | |||
| B230208H17Rik | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| B230208H17Rik | MB | Midbrain | 80.96 | |
| 80.78 | | |||
| B230208H17Rik | MY | Medulla | 68.21 | |
| 80.82 | | |||
| B230208H17Rik | OLF | Olfactory bulb | 91.33 | |
| 86.97 | | |||
| B230208H17Rik | P | Pons | 59.96 | |
| 68.19 | | |||
| B230208H17Rik | PAL | Pallidum | 63.04 | |
| 61.96 | | |||
| B230208H17Rik | RHP | Retrohippocampal region | 100 | |
| 94.59 | | |||
| B230208H17Rik | sAMY | Striatum-like amygdalar nuclei | 68.89 | |
| 53.95 | | |||
| B230208H17Rik | STR | Striatum | 99.1 | |
| 78.36 | | |||
| B230208H17Rik | STRd | Striatum dorsal region | 99.57 | |
| 78.12 | | |||
| B230208H17Rik | STRv | Striatum ventral region | 100 | |
| 89.25 | | |||
| B230208H17Rik | TH | Thalamus | 83.37 | |
| 78.82 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PARF_HUMAN_1 | 17 | 1 | 17 | MFSALKKLVGSDQAPGR | PRIDE |
| PARF_HUMAN_225 | 11 | 225 | 235 | FFNIPFLQLQR | PRIDE |
| PAp00010269 | 15 | 483 | 497 | GPAPAPQQCSEPETK | Peptide Atlas |