Annotation Detail for WDR11
Basic Information Top
Gene Symbol: | WDR11 ( BRWD2,DKFZp434L1715,DR11,FLJ42531,WDR15 ) |
---|---|
Gene Full Name: | WD repeat domain 11 |
Band: | 10q26.12 |
Quick Links | Entrez ID:55717; OMIM: 606417; Uniprot ID:WDR11_HUMAN; ENSEMBL ID: ENSG00000120008; HGNC ID: 13831 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.144447
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 6 / 70761 | 84 | |
blastocyst | 8 / 62319 | 128 | |
fetus | 35 / 564012 | 62 | |
neonate | 2 / 31097 | 64 | |
infant | 0 / 23620 | 0 | |
juvenile | 2 / 55556 | 35 | |
adult | 113 / 1939121 | 58 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 3 / 94178 | 31 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 5 / 82823 | 60 | |
colorectal tumor | 7 / 114246 | 61 | |
esophageal tumor | 1 / 17290 | 57 | |
gastrointestinal tumor | 5 / 119369 | 41 | |
germ cell tumor | 13 / 263845 | 49 | |
glioma | 1 / 106883 | 9 | |
head and neck tumor | 17 / 136302 | 124 | |
kidney tumor | 2 / 68959 | 29 | |
leukemia | 5 / 95842 | 52 | |
liver tumor | 4 / 96359 | 41 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 5 / 71755 | 69 | |
non-neoplasia | 3 / 97250 | 30 | |
normal | 217 / 3360307 | 64 | |
ovarian tumor | 8 / 76682 | 104 | |
pancreatic tumor | 12 / 104616 | 114 | |
primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
prostate cancer | 7 / 102680 | 68 | |
retinoblastoma | 1 / 46356 | 21 | |
skin tumor | 1 / 124949 | 8 | |
soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
uterine tumor | 5 / 90257 | 55 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 1 / 13106 | 76 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 5 / 40015 | 124 | |
bladder | 2 / 29757 | 67 | |
blood | 3 / 123478 | 24 | |
bone | 5 / 71655 | 69 | |
bone marrow | 6 / 48801 | 122 | |
brain | 74 / 1100989 | 67 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 4 / 149255 | 26 | |
ear | 1 / 16212 | 61 | |
embryonic tissue | 18 / 215722 | 83 | |
esophagus | 1 / 20209 | 49 | |
eye | 7 / 211054 | 33 | |
heart | 3 / 89626 | 33 | |
intestine | 14 / 234472 | 59 | |
kidney | 11 / 211777 | 51 | |
larynx | 0 / 24145 | 0 | |
liver | 6 / 207743 | 28 | |
lung | 13 / 336974 | 38 | |
lymph | 5 / 44270 | 112 | |
lymph node | 14 / 91610 | 152 | |
mammary gland | 7 / 153271 | 45 | |
mouth | 9 / 67052 | 134 | |
muscle | 4 / 107715 | 37 | |
nerve | 2 / 15768 | 126 | |
ovary | 8 / 102051 | 78 | |
pancreas | 14 / 214812 | 65 | |
parathyroid | 3 / 20539 | 146 | |
pharynx | 1 / 41328 | 24 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 16 / 280825 | 56 | |
prostate | 14 / 189345 | 73 | |
salivary gland | 0 / 20155 | 0 | |
skin | 15 / 210574 | 71 | |
spleen | 0 / 53952 | 0 | |
stomach | 1 / 96619 | 10 | |
testis | 33 / 330442 | 99 | |
thymus | 1 / 81131 | 12 | |
thyroid | 10 / 47473 | 210 | |
tonsil | 0 / 16999 | 0 | |
trachea | 12 / 52413 | 228 | |
umbilical cord | 1 / 13680 | 73 | |
uterus | 24 / 232878 | 103 | |
vascular | 3 / 51780 | 57 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218090_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 70.9 | |
Adipocyte | 9.45 | |
AdrenalCortex | 11.35 | |
Adrenalgland | 9 | |
Amygdala | 57.45 | |
Appendix | 11 | |
AtrioventricularNode | 7.7 | |
BDCA4+_DentriticCells | 83.75 | |
Bonemarrow | 8.6 | |
BronchialEpithelialCells | 25.95 | |
CD105+_Endothelial | 46.75 | |
CD14+_Monocytes | 48.6 | |
CD19+_BCells(neg._sel.) | 163.95 | |
CD33+_Myeloid | 128.15 | |
CD34+ | 79.6 | |
CD4+_Tcells | 25.5 | |
CD56+_NKCells | 123 | |
CD71+_EarlyErythroid | 8.1 | |
CD8+_Tcells | 34.3 | |
CardiacMyocytes | 13.95 | |
Caudatenucleus | 8.6 | |
Cerebellum | 6.7 | |
CerebellumPeduncles | 11.15 | |
CiliaryGanglion | 6.6 | |
CingulateCortex | 9.4 | |
Colorectaladenocarcinoma | 39.75 | |
DorsalRootGanglion | 7.1 | |
FetalThyroid | 10.75 | |
Fetalbrain | 19.6 | |
Fetalliver | 17.05 | |
Fetallung | 18.2 | |
GlobusPallidus | 6.5 | |
Heart | 12.75 | |
Hypothalamus | 28.75 | |
Kidney | 8.15 | |
Leukemia_chronicMyelogenousK-562 | 10.65 | |
Leukemia_promyelocytic-HL-60 | 47.05 | |
Leukemialymphoblastic(MOLT-4) | 10.8 | |
Liver | 11.9 | |
Lung | 9.05 | |
Lymphnode | 27.8 | |
Lymphoma_burkitts(Daudi) | 13.8 | |
Lymphoma_burkitts(Raji) | 156.85 | |
MedullaOblongata | 7.3 | |
OccipitalLobe | 10.5 | |
OlfactoryBulb | 9 | |
Ovary | 7 | |
Pancreas | 10 | |
PancreaticIslet | 13.85 | |
ParietalLobe | 9.8 | |
Pituitary | 13.65 | |
Placenta | 16.05 | |
Pons | 7.45 | |
PrefrontalCortex | 18.8 | |
Prostate | 38.9 | |
Salivarygland | 23.5 | |
SkeletalMuscle | 11 | |
Skin | 10.85 | |
SmoothMuscle | 21.05 | |
Spinalcord | 78.55 | |
SubthalamicNucleus | 9.55 | |
SuperiorCervicalGanglion | 15.45 | |
TemporalLobe | 7.7 | |
Testis | 8.55 | |
TestisGermCell | 9.55 | |
TestisIntersitial | 7.45 | |
TestisLeydigCell | 9.75 | |
TestisSeminiferousTubule | 7.75 | |
Thalamus | 12.95 | |
Thymus | 8.3 | |
Thyroid | 86.95 | |
Tongue | 8.55 | |
Tonsil | 10.1 | |
Trachea | 10.55 | |
TrigeminalGanglion | 14 | |
Uterus | 49 | |
UterusCorpus | 8 | |
WholeBlood | 29.1 | |
Wholebrain | 8.95 | |
colon | 44.75 | |
pineal_day | 107.6 | |
pineal_night | 99.52 | |
retina | 33.475 | |
small_intestine | 33.2 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P63929
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 6.07 ± 0.51 | |
Basal Forebrain | 6.27 ± 0.18 | |
Basal Part of Pons | 6.85 ± 0.41 | |
Cerebellar Cortex | 6.78 ± 0.17 | |
Cerebellar Nuclei | 6.42 ± 0.28 | |
Claustrum | 5.73 ± 0.58 | |
Epithalamus | 6.91 ± 0.5 | |
Frontal Lobe | 6.47 ± 0.33 | |
Globus Pallidus | 6.29 ± 0.28 | |
Hypothalamus | 6.69 ± 0.37 | |
Insula | 6.42 ± 0.35 | |
Limbic Lobe | 6.34 ± 0.39 | |
Mesencephalon | 6.29 ± 0.36 | |
Myelencephalon | 6.41 ± 0.48 | |
Occipital Lobe | 6.28 ± 0.42 | |
Parietal Lobe | 6.32 ± 0.45 | |
Pontine Tegmentum | 6.32 ± 0.33 | |
Striatum | 6.28 ± 0.34 | |
Subthalamus | 6.68 ± 0.18 | |
Temporal Lobe | 6.49 ± 0.38 | |
Thalamus | 6.36 ± 0.38 | |
White Matter | 6.8 ± 0.66 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Brwd2 | CB | Cerebellum | 5.7 | |
5.14 | ||||
Brwd2 | CTX | Cerebral cortex | 6.27 | |
2.41 | ||||
Brwd2 | HIP | Hippocampal region | 9.28 | |
6.72 | ||||
Brwd2 | HPF | Hippocampal formation | 8.22 | |
5.06 | ||||
Brwd2 | HY | Hypothalamus | 1.56 | |
0.46 | ||||
Brwd2 | LSX | Lateral septal complex | 0.1 | |
0.05 | ||||
Brwd2 | MB | Midbrain | 3.88 | |
2.01 | ||||
Brwd2 | MY | Medulla | 7.5 | |
4.15 | ||||
Brwd2 | OLF | Olfactory bulb | 6.97 | |
3.95 | ||||
Brwd2 | P | Pons | 8.18 | |
4.79 | ||||
Brwd2 | PAL | Pallidum | 2.2 | |
0.88 | ||||
Brwd2 | RHP | Retrohippocampal region | 6.37 | |
2.59 | ||||
Brwd2 | sAMY | Striatum-like amygdalar nuclei | 3.92 | |
1.11 | ||||
Brwd2 | STR | Striatum | 1.48 | |
0.69 | ||||
Brwd2 | STRd | Striatum dorsal region | 1.15 | |
0.72 | ||||
Brwd2 | STRv | Striatum ventral region | 1.91 | |
0.71 | ||||
Brwd2 | TH | Thalamus | 2.99 | |
1.32 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00011690 | 14 | 287 | 300 | TGVPFLQVIPCFQR | Peptide Atlas |