AutismKB 2.0

Annotation Detail for IQCC


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Basic Information Top
Gene Symbol:IQCC ( FLJ10547,MGC120341,RP4-622L5.6 )
Gene Full Name: IQ motif containing C
Band: 1p35.2
Quick LinksEntrez ID:55721; OMIM: NA; Uniprot ID:IQCC_HUMAN; ENSEMBL ID: ENSG00000160051; HGNC ID: 25545
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult13 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor7 / 26384526
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal27 / 33603078
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain14 / 110098912
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye0 / 2110540 
heart0 / 896260 
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis15 / 33044245
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206650_at
Cell line Expression level Expression bar
721_B_lymphoblasts83.65
Adipocyte86.95
AdrenalCortex177.95
Adrenalgland66.35
Amygdala47.75
Appendix73.4
AtrioventricularNode199.3
BDCA4+_DentriticCells43.7
Bonemarrow98.65
BronchialEpithelialCells33.2
CD105+_Endothelial49.75
CD14+_Monocytes63.95
CD19+_BCells(neg._sel.)67.3
CD33+_Myeloid64.15
CD34+64.45
CD4+_Tcells83.45
CD56+_NKCells54.2
CD71+_EarlyErythroid83.05
CD8+_Tcells58.15
CardiacMyocytes91.5
Caudatenucleus89
Cerebellum80.25
CerebellumPeduncles166.15
CiliaryGanglion178.2
CingulateCortex108.25
Colorectaladenocarcinoma67.9
DorsalRootGanglion210.5
FetalThyroid77.4
Fetalbrain84.65
Fetalliver82
Fetallung53.4
GlobusPallidus208.35
Heart162.95
Hypothalamus96.2
Kidney82.15
Leukemia_chronicMyelogenousK-56292.65
Leukemia_promyelocytic-HL-6042.9
Leukemialymphoblastic(MOLT-4)69.85
Liver98.3
Lung28.15
Lymphnode53.15
Lymphoma_burkitts(Daudi)115.95
Lymphoma_burkitts(Raji)133.4
MedullaOblongata90.65
OccipitalLobe74.8
OlfactoryBulb86.1
Ovary88.3
Pancreas89.6
PancreaticIslet84.5
ParietalLobe119.1
Pituitary133.85
Placenta77.9
Pons154.95
PrefrontalCortex111.75
Prostate83.1
Salivarygland85.3
SkeletalMuscle157.5
Skin140.4
SmoothMuscle96.65
Spinalcord89.1
SubthalamicNucleus236.2
SuperiorCervicalGanglion78.2
TemporalLobe88.75
Testis64.35
TestisGermCell64.3
TestisIntersitial63.25
TestisLeydigCell101.1
TestisSeminiferousTubule104.35
Thalamus137.05
Thymus57.1
Thyroid66.85
Tongue116.05
Tonsil95.3
Trachea64.95
TrigeminalGanglion114.1
Uterus43.8
UterusCorpus42.35
WholeBlood42.8
Wholebrain25.25
colon68.8
pineal_day100.66
pineal_night93.22
retina103
small_intestine43.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P74162
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.43 ± 0.95
Basal Forebrain2.86 ± 0.38
Basal Part of Pons2.84 ± 0.58
Cerebellar Cortex3.6 ± 0.57
Cerebellar Nuclei3.19 ± 0.68
Claustrum3.49 ± 0.84
Epithalamus3.09 ± 0.83
Frontal Lobe2.98 ± 0.73
Globus Pallidus2.73 ± 0.48
Hypothalamus3.25 ± 0.65
Insula2.75 ± 0.8
Limbic Lobe3.02 ± 0.63
Mesencephalon3.27 ± 0.76
Myelencephalon3.03 ± 0.72
Occipital Lobe3.24 ± 0.92
Parietal Lobe3.1 ± 0.81
Pontine Tegmentum3.11 ± 0.74
Striatum2.67 ± 0.86
Subthalamus3.18 ± 0.89
Temporal Lobe3.07 ± 0.71
Thalamus2.87 ± 0.72
White Matter2.74 ± 0.7
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
IqccCBCerebellum10.57
10.15
IqccCTXCerebral cortex21.57
13.88
IqccHIPHippocampal region26.01
26.43
IqccHPFHippocampal formation24.74
22.15
IqccHYHypothalamus2.14
1.47
IqccLSXLateral septal complex2.19
1.28
IqccMBMidbrain5.27
3.98
IqccMYMedulla7
5.9
IqccOLFOlfactory bulb33.1
23.42
IqccPPons6.39
5.38
IqccPALPallidum6.39
4.77
IqccRHPRetrohippocampal region22.73
16.77
IqccsAMYStriatum-like amygdalar nuclei10.03
6.05
IqccSTRStriatum12.55
7.92
IqccSTRdStriatum dorsal region12.89
8.32
IqccSTRvStriatum ventral region17.15
10
IqccTHThalamus8.29
6.57
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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