Annotation Detail for ASF1B
Basic Information Top
| Gene Symbol: | ASF1B ( CIA-II,FLJ10604 ) |
|---|---|
| Gene Full Name: | ASF1 anti-silencing function 1 homolog B (S. cerevisiae) |
| Band: | 19p13.12 |
| Quick Links | Entrez ID:55723; OMIM: 609190; Uniprot ID:ASF1B_HUMAN; ENSEMBL ID: ENSG00000105011; HGNC ID: 20996 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.26516
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 22 / 564012 | 39 | |
| neonate | 1 / 31097 | 32 | |
| infant | 6 / 23620 | 254 |  |
| juvenile | 10 / 55556 | 179 | |
| adult | 62 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 9 / 34366 | 261 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 17 / 119369 | 142 | |
| germ cell tumor | 37 / 263845 | 140 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 21 / 103127 | 203 | |
| lymphoma | 23 / 71755 | 320 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 117 / 3360307 | 34 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 34 / 125680 | 270 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 5 / 46356 | 107 | |
| skin tumor | 13 / 124949 | 104 | |
| soft tissue/muscle tissue tumor | 27 / 125191 | 215 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 1 / 29757 | 33 | |
| blood | 15 / 123478 | 121 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 27 / 1100989 | 24 | |
| cervix | 11 / 48171 | 228 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 9 / 211054 | 42 | |
| heart | 1 / 89626 | 11 | |
| intestine | 21 / 234472 | 89 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 25 / 336974 | 74 | |
| lymph | 14 / 44270 | 316 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 12 / 107715 | 111 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 24 / 280825 | 85 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 35 / 330442 | 105 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 6 / 16999 | 352 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 22 / 232878 | 94 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218115_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 201.35 | |
| Adipocyte | 3.55 | |
| AdrenalCortex | 3.55 | |
| Adrenalgland | 3 | |
| Amygdala | 3.85 | |
| Appendix | 4.1 | |
| AtrioventricularNode | 2.6 | |
| BDCA4+_DentriticCells | 4.05 | |
| Bonemarrow | 7.2 | |
| BronchialEpithelialCells | 3.45 | |
| CD105+_Endothelial | 51.45 | |
| CD14+_Monocytes | 3.9 | |
| CD19+_BCells(neg._sel.) | 3.7 | |
| CD33+_Myeloid | 6.8 | |
| CD34+ | 51.7 | |
| CD4+_Tcells | 3.7 | |
| CD56+_NKCells | 6.1 | |
| CD71+_EarlyErythroid | 77.55 | |
| CD8+_Tcells | 3.1 | |
| CardiacMyocytes | 4.85 | |
| Caudatenucleus | 3.25 | |
| Cerebellum | 3.4 | |
| CerebellumPeduncles | 4.15 | |
| CiliaryGanglion | 2.6 | |
| CingulateCortex | 3.7 | |
| Colorectaladenocarcinoma | 67.65 | |
| DorsalRootGanglion | 2.85 | |
| FetalThyroid | 3.9 | |
| Fetalbrain | 3.6 | |
| Fetalliver | 8.7 | |
| Fetallung | 3.05 | |
| GlobusPallidus | 2.75 | |
| Heart | 4.5 | |
| Hypothalamus | 4.05 | |
| Kidney | 2.8 | |
| Leukemia_chronicMyelogenousK-562 | 52.8 | |
| Leukemia_promyelocytic-HL-60 | 32.2 | |
| Leukemialymphoblastic(MOLT-4) | 177.7 | |
| Liver | 5.05 | |
| Lung | 4 | |
| Lymphnode | 3.1 | |
| Lymphoma_burkitts(Daudi) | 54.45 | |
| Lymphoma_burkitts(Raji) | 6.6 | |
| MedullaOblongata | 4.5 | |
| OccipitalLobe | 3.15 | |
| OlfactoryBulb | 2.95 | |
| Ovary | 2.45 | |
| Pancreas | 2.9 | |
| PancreaticIslet | 3.9 | |
| ParietalLobe | 3.9 | |
| Pituitary | 4.3 | |
| Placenta | 3.9 | |
| Pons | 3.5 | |
| PrefrontalCortex | 4.45 | |
| Prostate | 4.35 | |
| Salivarygland | 2.95 | |
| SkeletalMuscle | 4.15 | |
| Skin | 2.7 | |
| SmoothMuscle | 4.1 | |
| Spinalcord | 3.8 | |
| SubthalamicNucleus | 3.35 | |
| SuperiorCervicalGanglion | 5.85 | |
| TemporalLobe | 3.3 | |
| Testis | 16.65 | |
| TestisGermCell | 20.9 | |
| TestisIntersitial | 4.8 | |
| TestisLeydigCell | 6.65 | |
| TestisSeminiferousTubule | 14.25 | |
| Thalamus | 3.6 | |
| Thymus | 35 | |
| Thyroid | 4.5 | |
| Tongue | 3.55 | |
| Tonsil | 4.05 | |
| Trachea | 3 | |
| TrigeminalGanglion | 4.55 | |
| Uterus | 3.05 | |
| UterusCorpus | 3.2 | |
| WholeBlood | 9.25 | |
| Wholebrain | 3.1 | |
| colon | 3.9 | |
| pineal_day | 4.58 | |
| pineal_night | 4.24 | |
| retina | 4.425 | |
| small_intestine | 3.6 | |
- Probe name: CUST_5921_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.04 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.56 ± 0.19 | |
| Basal Part of Pons | 1.31 ± 0.41 | |
| Cerebellar Cortex | 1.44 ± 0.73 | |
| Cerebellar Nuclei | 1.87 ± 0.72 | |
| Claustrum | 2.48 ± 0.86 | |
| Epithalamus | 1.29 ± 0.69 | |
| Frontal Lobe | 1.43 ± 0.61 | |
| Globus Pallidus | 2.25 ± 0.33 | |
| Hypothalamus | 1.67 ± 0.65 | |
| Insula | 1.46 ± 0.5 | |
| Limbic Lobe | 1.59 ± 0.66 | |
| Mesencephalon | 1.75 ± 0.71 | |
| Myelencephalon | 1.62 ± 0.68 | |
| Occipital Lobe | 1.59 ± 0.55 | |
| Parietal Lobe | 1.65 ± 0.8 | |
| Pontine Tegmentum | 1.65 ± 0.66 | |
| Striatum | 1.72 ± 0.46 | |
| Subthalamus | 1.73 ± 0.63 | |
| Temporal Lobe | 1.49 ± 0.62 | |
| Thalamus | 1.58 ± 0.57 | |
| White Matter | 2.13 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Asf1b | CB | Cerebellum | 0.64 | |
| 0.96 | | |||
| Asf1b | CTX | Cerebral cortex | 0.31 | |
| 0.37 | | |||
| Asf1b | HIP | Hippocampal region | 0.5 | |
| 0.44 | | |||
| Asf1b | HPF | Hippocampal formation | 1.07 | |
| 1.02 | | |||
| Asf1b | HY | Hypothalamus | 0.37 | |
| 0.78 | | |||
| Asf1b | LSX | Lateral septal complex | 0.26 | |
| 0.24 | | |||
| Asf1b | MB | Midbrain | 0.36 | |
| 1.01 | | |||
| Asf1b | MY | Medulla | 0.7 | |
| 1.13 | | |||
| Asf1b | OLF | Olfactory bulb | 1.93 | |
| 2.18 | | |||
| Asf1b | P | Pons | 0.78 | |
| 1.31 | | |||
| Asf1b | PAL | Pallidum | 0.14 | |
| 0.45 | | |||
| Asf1b | RHP | Retrohippocampal region | 2.31 | |
| 2.08 | | |||
| Asf1b | sAMY | Striatum-like amygdalar nuclei | 0.05 | |
| 0.03 | | |||
| Asf1b | STR | Striatum | 0.09 | |
| 0.15 | | |||
| Asf1b | STRd | Striatum dorsal region | 0.06 | |
| 0.15 | | |||
| Asf1b | STRv | Striatum ventral region | 0.09 | |
| 0.19 | | |||
| Asf1b | TH | Thalamus | 0.2 | |
| 0.56 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00080227 | 15 | 109 | 123 | VGYYVNNEYLNPELR | Peptide Atlas |