Annotation Detail for CARKD
Basic Information Top
| Gene Symbol: | CARKD ( FLJ10769,FLJ34548,FLJ52550,LP3298 ) |
|---|---|
| Gene Full Name: | carbohydrate kinase domain containing |
| Band: | 13q34 |
| Quick Links | Entrez ID:55739; OMIM: NA; Uniprot ID:CARKD_HUMAN; ENSEMBL ID: ENSG00000213995; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.408324
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 84 / 564012 | 148 | |
| neonate | 6 / 31097 | 192 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 165 / 1939121 | 85 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 12 / 114246 | 105 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 36 / 263845 | 136 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 42 / 136302 | 308 |  |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 23 / 96359 | 238 | |
| lung tumor | 9 / 103127 | 87 | |
| lymphoma | 2 / 71755 | 27 |  |
| non-neoplasia | 10 / 97250 | 102 | |
| normal | 475 / 3360307 | 141 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 12 / 104616 | 114 | |
| primitive neuroectodermal tumor of the CNS | 21 / 125680 | 167 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 16 / 90257 | 177 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 8 / 33197 | 240 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 2 / 29757 | 67 | |
| blood | 7 / 123478 | 56 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 260 / 1100989 | 236 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 17 / 211054 | 80 | |
| heart | 13 / 89626 | 145 | |
| intestine | 35 / 234472 | 149 | |
| kidney | 27 / 211777 | 127 | |
| larynx | 4 / 24145 | 165 | |
| liver | 29 / 207743 | 139 | |
| lung | 42 / 336974 | 124 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 15 / 91610 | 163 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 38 / 67052 | 566 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 25 / 214812 | 116 | |
| parathyroid | 4 / 20539 | 194 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 27 / 189345 | 142 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 16 / 210574 | 75 | |
| spleen | 17 / 53952 | 315 | |
| stomach | 7 / 96619 | 72 | |
| testis | 44 / 330442 | 133 | |
| thymus | 27 / 81131 | 332 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 7 / 52413 | 133 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 37 / 232878 | 158 | |
| vascular | 6 / 51780 | 115 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 217940_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 259.75 | |
| Adipocyte | 13.7 | |
| AdrenalCortex | 80.15 | |
| Adrenalgland | 91.4 | |
| Amygdala | 171.25 | |
| Appendix | 5.45 |  |
| AtrioventricularNode | 3.3 | |
| BDCA4+_DentriticCells | 208.1 | |
| Bonemarrow | 4.8 | |
| BronchialEpithelialCells | 11 | |
| CD105+_Endothelial | 37.2 | |
| CD14+_Monocytes | 63.45 | |
| CD19+_BCells(neg._sel.) | 111.2 | |
| CD33+_Myeloid | 90.5 | |
| CD34+ | 123.05 | |
| CD4+_Tcells | 239.9 | |
| CD56+_NKCells | 98.7 | |
| CD71+_EarlyErythroid | 16.25 | |
| CD8+_Tcells | 222.55 | |
| CardiacMyocytes | 13.65 | |
| Caudatenucleus | 55.15 | |
| Cerebellum | 53.8 | |
| CerebellumPeduncles | 78.45 | |
| CiliaryGanglion | 3.05 | |
| CingulateCortex | 43.45 | |
| Colorectaladenocarcinoma | 126.15 | |
| DorsalRootGanglion | 3.7 | |
| FetalThyroid | 30.75 | |
| Fetalbrain | 133 | |
| Fetalliver | 10.25 | |
| Fetallung | 58.4 | |
| GlobusPallidus | 22.25 | |
| Heart | 6.8 | |
| Hypothalamus | 143.5 | |
| Kidney | 32.65 | |
| Leukemia_chronicMyelogenousK-562 | 16.4 | |
| Leukemia_promyelocytic-HL-60 | 3.3 | |
| Leukemialymphoblastic(MOLT-4) | 34.15 | |
| Liver | 35.2 | |
| Lung | 93.25 | |
| Lymphnode | 34.15 | |
| Lymphoma_burkitts(Daudi) | 6.95 | |
| Lymphoma_burkitts(Raji) | 37.25 | |
| MedullaOblongata | 39.6 | |
| OccipitalLobe | 76.95 | |
| OlfactoryBulb | 66.5 | |
| Ovary | 25.5 | |
| Pancreas | 106.65 | |
| PancreaticIslet | 72.8 | |
| ParietalLobe | 26.8 | |
| Pituitary | 60 | |
| Placenta | 104.55 | |
| Pons | 10.15 | |
| PrefrontalCortex | 155.6 | |
| Prostate | 165 | |
| Salivarygland | 8.95 | |
| SkeletalMuscle | 8 | |
| Skin | 5 | |
| SmoothMuscle | 25.25 | |
| Spinalcord | 104.5 | |
| SubthalamicNucleus | 42 | |
| SuperiorCervicalGanglion | 5.25 | |
| TemporalLobe | 35.75 | |
| Testis | 107.8 | |
| TestisGermCell | 239.95 | |
| TestisIntersitial | 39 | |
| TestisLeydigCell | 21.6 | |
| TestisSeminiferousTubule | 45.5 | |
| Thalamus | 97.55 | |
| Thymus | 50.25 | |
| Thyroid | 234.35 | |
| Tongue | 4.9 | |
| Tonsil | 8.9 | |
| Trachea | 13.4 | |
| TrigeminalGanglion | 4.3 | |
| Uterus | 79.5 | |
| UterusCorpus | 14.2 | |
| WholeBlood | 7.8 | |
| Wholebrain | 189.3 | |
| colon | 28.65 | |
| pineal_day | 228.5 | |
| pineal_night | 214.34 | |
| retina | 167.675 | |
| small_intestine | 21.2 | |
- Probe name: CUST_10826_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.42 ± 0.77 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.32 ± 0.47 | |
| Basal Part of Pons | 4.65 ± 0.57 | |
| Cerebellar Cortex | 4.9 ± 0.52 | |
| Cerebellar Nuclei | 4.55 ± 0.55 | |
| Claustrum | 4.56 ± 0.82 | |
| Epithalamus | 3.8 ± 0.69 | |
| Frontal Lobe | 4.23 ± 0.63 | |
| Globus Pallidus | 4.95 ± 0.67 | |
| Hypothalamus | 3.98 ± 0.99 | |
| Insula | 4.29 ± 0.54 | |
| Limbic Lobe | 4.28 ± 0.55 | |
| Mesencephalon | 4.38 ± 0.73 | |
| Myelencephalon | 4.41 ± 0.71 | |
| Occipital Lobe | 4.6 ± 0.64 | |
| Parietal Lobe | 4.5 ± 0.82 | |
| Pontine Tegmentum | 4.32 ± 0.67 | |
| Striatum | 4.49 ± 0.69 | |
| Subthalamus | 4.37 ± 0.54 | |
| Temporal Lobe | 4.28 ± 0.54 | |
| Thalamus | 4.39 ± 0.56 | |
| White Matter | 4.61 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 0710008K08Rik | CB | Cerebellum | 68.9 | |
| 100 | | |||
| 0710008K08Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| 0710008K08Rik | HIP | Hippocampal region | 97.37 | |
| 100 | | |||
| 0710008K08Rik | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| 0710008K08Rik | HY | Hypothalamus | 80.02 | |
| 72.91 | | |||
| 0710008K08Rik | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| 0710008K08Rik | MB | Midbrain | 88.47 | |
| 89.34 | | |||
| 0710008K08Rik | MY | Medulla | 85.33 | |
| 100 | | |||
| 0710008K08Rik | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| 0710008K08Rik | P | Pons | 82.94 | |
| 95.84 | | |||
| 0710008K08Rik | PAL | Pallidum | 87.5 | |
| 88.85 | | |||
| 0710008K08Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 0710008K08Rik | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 85.18 | | |||
| 0710008K08Rik | STR | Striatum | 100 | |
| 97.48 | | |||
| 0710008K08Rik | STRd | Striatum dorsal region | 100 | |
| 93.85 | | |||
| 0710008K08Rik | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| 0710008K08Rik | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003824 | 23 | 76 | 98 | IGVVGGCQEYTGAPYFAAISALK | Peptide Atlas |