Annotation Detail for TTC17
Basic Information Top
| Gene Symbol: | TTC17 ( DKFZp686D20222,FLJ10890,FLJ13099,FLJ23673 ) |
|---|---|
| Gene Full Name: | tetratricopeptide repeat domain 17 |
| Band: | 11p12-p11.2 |
| Quick Links | Entrez ID:55761; OMIM: NA; Uniprot ID:TTC17_HUMAN; ENSEMBL ID: ENSG00000052841; HGNC ID: 25596 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.191186
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 10 / 62319 | 160 | |
| fetus | 102 / 564012 | 180 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 3 / 23620 | 127 | |
| juvenile | 9 / 55556 | 161 | |
| adult | 169 / 1939121 | 87 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 24 / 263845 | 90 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 16 / 136302 | 117 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 22 / 96359 | 228 |  |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 301 / 3360307 | 89 | |
| ovarian tumor | 11 / 76682 | 143 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 56 / 1100989 | 50 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 29 / 215722 | 134 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 18 / 211054 | 85 | |
| heart | 9 / 89626 | 100 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 26 / 211777 | 122 | |
| larynx | 0 / 24145 | 0 | |
| liver | 29 / 207743 | 139 | |
| lung | 40 / 336974 | 118 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 11 / 67052 | 164 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 11 / 102051 | 107 | |
| pancreas | 22 / 214812 | 102 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 7 / 210574 | 33 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 6 / 96619 | 62 | |
| testis | 39 / 330442 | 118 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 18 / 232878 | 77 | |
| vascular | 1 / 51780 | 19 | |
- Probe name: A_23_P414899
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.82 ± 0.23 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.83 ± 0.15 | |
| Basal Part of Pons | 7.42 ± 0.2 | |
| Cerebellar Cortex | 7.92 ± 0.15 | |
| Cerebellar Nuclei | 7.66 ± 0.25 | |
| Claustrum | 7.99 ± 0.42 | |
| Epithalamus | 7.92 ± 0.16 | |
| Frontal Lobe | 7.58 ± 0.29 | |
| Globus Pallidus | 8.17 ± 0.19 | |
| Hypothalamus | 7.47 ± 0.26 | |
| Insula | 7.58 ± 0.2 | |
| Limbic Lobe | 7.85 ± 0.34 | |
| Mesencephalon | 7.79 ± 0.26 | |
| Myelencephalon | 7.74 ± 0.31 | |
| Occipital Lobe | 8.12 ± 0.38 | |
| Parietal Lobe | 7.76 ± 0.28 | |
| Pontine Tegmentum | 7.77 ± 0.32 | |
| Striatum | 7.86 ± 0.33 | |
| Subthalamus | 7.61 ± 0.05 | |
| Temporal Lobe | 7.66 ± 0.27 | |
| Thalamus | 7.8 ± 0.2 | |
| White Matter | 8.34 ± 0.28 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| TTC17_HUMAN_62 | 10 | 62 | 71 | HPHDLVILMR | PRIDE |