AutismKB 2.0

Annotation Detail for IFT122


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Basic Information Top
Gene Symbol:IFT122 ( CED,SPG,WDR10,WDR10p,WDR140 )
Gene Full Name: intraflagellar transport 122 homolog (Chlamydomonas)
Band: 3q21.3-q22.1
Quick LinksEntrez ID:55764; OMIM: 606045; Uniprot ID:IF122_HUMAN; ENSEMBL ID: ENSG00000163913; HGNC ID: 13556
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus50 / 56401288
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult107 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor33 / 263845125
glioma1 / 1068839
head and neck tumor22 / 136302161
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal275 / 336030781
ovarian tumor2 / 7668226
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer3 / 10268029
retinoblastoma2 / 4635643
skin tumor1 / 1249498
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood4 / 12347832
bone3 / 7165541
bone marrow0 / 488010 
brain146 / 1100989132
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye15 / 21105471
heart3 / 8962633
intestine6 / 23447225
kidney5 / 21177723
larynx0 / 241450 
liver5 / 20774324
lung11 / 33697432
lymph0 / 442700 
lymph node3 / 9161032
mammary gland14 / 15327191
mouth20 / 67052298
muscle6 / 10771555
nerve0 / 157680 
ovary4 / 10205139
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta11 / 28082539
prostate7 / 18934536
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach4 / 9661941
testis368 / 3304421113
thymus5 / 8113161
thyroid3 / 4747363
tonsil1 / 1699958
trachea26 / 52413496
umbilical cord0 / 136800 
uterus29 / 232878124
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220744_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.4
Adipocyte5.6
AdrenalCortex5.4
Adrenalgland4.3
Amygdala5.25
Appendix5.15
AtrioventricularNode3.9
BDCA4+_DentriticCells5.3
Bonemarrow5
BronchialEpithelialCells4.8
CD105+_Endothelial6.4
CD14+_Monocytes5.25
CD19+_BCells(neg._sel.)5.05
CD33+_Myeloid6.2
CD34+11.75
CD4+_Tcells5.2
CD56+_NKCells5.6
CD71+_EarlyErythroid86
CD8+_Tcells4.6
CardiacMyocytes6.8
Caudatenucleus6.75
Cerebellum4.1
CerebellumPeduncles5.8
CiliaryGanglion3.65
CingulateCortex5.2
Colorectaladenocarcinoma5
DorsalRootGanglion3.85
FetalThyroid5.9
Fetalbrain5.1
Fetalliver4.4
Fetallung7.6
GlobusPallidus5
Heart6.7
Hypothalamus6.9
Kidney4.2
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.4
Leukemialymphoblastic(MOLT-4)5
Liver6.6
Lung6.65
Lymphnode4.2
Lymphoma_burkitts(Daudi)6.45
Lymphoma_burkitts(Raji)7.2
MedullaOblongata4.7
OccipitalLobe4.4
OlfactoryBulb6.05
Ovary5.5
Pancreas4.1
PancreaticIslet5.6
ParietalLobe5.4
Pituitary7.75
Placenta5
Pons4.9
PrefrontalCortex10.1
Prostate10.05
Salivarygland4
SkeletalMuscle6.95
Skin3.95
SmoothMuscle5.45
Spinalcord5.35
SubthalamicNucleus4.6
SuperiorCervicalGanglion5.65
TemporalLobe4.65
Testis392.5
TestisGermCell309.75
TestisIntersitial213.35
TestisLeydigCell281.15
TestisSeminiferousTubule171.2
Thalamus6.05
Thymus5.3
Thyroid11.75
Tongue4.95
Tonsil4.85
Trachea4.35
TrigeminalGanglion5.25
Uterus3.95
UterusCorpus4.65
WholeBlood5.4
Wholebrain15.35
colon4.95
pineal_day13.38
pineal_night10.08
retina6.25
small_intestine4.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1040_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.7 ± 0.42
Basal Forebrain5.67 ± 0.29
Basal Part of Pons5.58 ± 0.63
Cerebellar Cortex5.6 ± 0.26
Cerebellar Nuclei5.16 ± 0.5
Claustrum5.46 ± 0.38
Epithalamus6.42 ± 0.68
Frontal Lobe5.6 ± 0.48
Globus Pallidus4.42 ± 0.52
Hypothalamus5.8 ± 0.24
Insula5.69 ± 0.42
Limbic Lobe5.7 ± 0.57
Mesencephalon5.58 ± 0.5
Myelencephalon5.66 ± 0.54
Occipital Lobe5.96 ± 0.4
Parietal Lobe5.85 ± 0.41
Pontine Tegmentum5.62 ± 0.59
Striatum6.18 ± 0.38
Subthalamus5.43 ± 0.46
Temporal Lobe5.77 ± 0.42
Thalamus5.48 ± 0.41
White Matter4.62 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ift122CBCerebellum0.56
0.61
Ift122CTXCerebral cortex0.52
0.55
Ift122HIPHippocampal region1.71
1.42
Ift122HPFHippocampal formation1.2
0.93
Ift122HYHypothalamus0.1
0.11
Ift122LSXLateral septal complex0.03
0
Ift122MBMidbrain0.4
0.83
Ift122MYMedulla0.57
0.69
Ift122OLFOlfactory bulb1.69
1.18
Ift122PPons0.78
1.2
Ift122PALPallidum0.04
0.07
Ift122RHPRetrohippocampal region0.29
0.2
Ift122sAMYStriatum-like amygdalar nuclei0.05
0.08
Ift122STRStriatum0.06
0.05
Ift122STRdStriatum dorsal region0.06
0.05
Ift122STRvStriatum ventral region0.05
0.05
Ift122THThalamus0.39
0.97
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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