Annotation Detail for MBD5
Basic Information Top
| Gene Symbol: | MBD5 ( FLJ11113,FLJ30517,KIAA1461,MRD1 ) |
|---|---|
| Gene Full Name: | methyl-CpG binding domain protein 5 |
| Band: | 2q23.2 |
| Quick Links | Entrez ID:55777; OMIM: 611472; Uniprot ID:MBD5_HUMAN; ENSEMBL ID: ENSG00000204406; HGNC ID: 20444 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.458312
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 39 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 80 / 3360307 | 23 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 30 / 1100989 | 27 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 5 / 96619 | 51 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_214_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.32 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.14 ± 0.14 | |
| Basal Part of Pons | 6.8 ± 0.29 | |
| Cerebellar Cortex | 7.35 ± 0.15 | |
| Cerebellar Nuclei | 6.65 ± 0.28 | |
| Claustrum | 7.35 ± 0.57 | |
| Epithalamus | 6.79 ± 0.18 | |
| Frontal Lobe | 7 ± 0.28 | |
| Globus Pallidus | 6.4 ± 0.2 | |
| Hypothalamus | 6.88 ± 0.31 | |
| Insula | 7.09 ± 0.21 | |
| Limbic Lobe | 7.28 ± 0.34 | |
| Mesencephalon | 7.1 ± 0.29 | |
| Myelencephalon | 7.05 ± 0.3 | |
| Occipital Lobe | 7.37 ± 0.21 | |
| Parietal Lobe | 7.11 ± 0.3 | |
| Pontine Tegmentum | 7.04 ± 0.31 | |
| Striatum | 7.04 ± 0.28 | |
| Subthalamus | 6.84 ± 0.11 | |
| Temporal Lobe | 7.09 ± 0.29 | |
| Thalamus | 6.98 ± 0.24 | |
| White Matter | 6.96 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Mbd5 | CB | Cerebellum | 25.34 | |
| 32.04 | | |||
| Mbd5 | CTX | Cerebral cortex | 90.83 | |
| 72.08 | | |||
| Mbd5 | HIP | Hippocampal region | 78.84 | |
| 100 | | |||
| Mbd5 | HPF | Hippocampal formation | 78.81 | |
| 100 | | |||
| Mbd5 | HY | Hypothalamus | 33.58 | |
| 24.7 | | |||
| Mbd5 | LSX | Lateral septal complex | 67.44 | |
| 48.96 | | |||
| Mbd5 | MB | Midbrain | 47.04 | |
| 39.81 | | |||
| Mbd5 | MY | Medulla | 46.18 | |
| 46.34 | | |||
| Mbd5 | OLF | Olfactory bulb | 69.35 | |
| 55.5 | | |||
| Mbd5 | P | Pons | 42.95 | |
| 41.94 | | |||
| Mbd5 | PAL | Pallidum | 42.17 | |
| 34.77 | | |||
| Mbd5 | RHP | Retrohippocampal region | 80.34 | |
| 67.79 | | |||
| Mbd5 | sAMY | Striatum-like amygdalar nuclei | 50.97 | |
| 34.44 | | |||
| Mbd5 | STR | Striatum | 72.05 | |
| 51.33 | | |||
| Mbd5 | STRd | Striatum dorsal region | 78.3 | |
| 56.95 | | |||
| Mbd5 | STRv | Striatum ventral region | 63.78 | |
| 42.85 | | |||
| Mbd5 | TH | Thalamus | 56.19 | |
| 45.35 | |