AutismKB 2.0

Annotation Detail for ZNF839


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Basic Information Top
Gene Symbol:ZNF839 ( C14orf131,FLJ11132 )
Gene Full Name: zinc finger protein 839
Band: 14q32.31
Quick LinksEntrez ID:55778; OMIM: NA; Uniprot ID:ZN839_HUMAN; ENSEMBL ID: ENSG00000022976; HGNC ID: 20345
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal14 / 33603074
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain3 / 11009892
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung5 / 33697414
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221709_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.25
Adipocyte9.05
AdrenalCortex11.9
Adrenalgland6.85
Amygdala8.9
Appendix8.95
AtrioventricularNode7.6
BDCA4+_DentriticCells9.15
Bonemarrow8.95
BronchialEpithelialCells8.65
CD105+_Endothelial9.25
CD14+_Monocytes9.5
CD19+_BCells(neg._sel.)9.95
CD33+_Myeloid11.8
CD34+11.6
CD4+_Tcells19.25
CD56+_NKCells10.25
CD71+_EarlyErythroid7.9
CD8+_Tcells12.65
CardiacMyocytes12.25
Caudatenucleus8.1
Cerebellum7.3
CerebellumPeduncles10.7
CiliaryGanglion8.95
CingulateCortex9.05
Colorectaladenocarcinoma11.4
DorsalRootGanglion7.65
FetalThyroid12.3
Fetalbrain9.2
Fetalliver8.05
Fetallung7.15
GlobusPallidus6.2
Heart13.65
Hypothalamus9.8
Kidney7.4
Leukemia_chronicMyelogenousK-5629.2
Leukemia_promyelocytic-HL-608.2
Leukemialymphoblastic(MOLT-4)15.25
Liver13.15
Lung10.1
Lymphnode7.85
Lymphoma_burkitts(Daudi)13.3
Lymphoma_burkitts(Raji)15.25
MedullaOblongata7.6
OccipitalLobe8
OlfactoryBulb7.1
Ovary7.6
Pancreas7.35
PancreaticIslet9.65
ParietalLobe11.15
Pituitary10.7
Placenta10.9
Pons11.7
PrefrontalCortex10.7
Prostate10.45
Salivarygland12.9
SkeletalMuscle13.7
Skin7.05
SmoothMuscle10.15
Spinalcord9.8
SubthalamicNucleus8.4
SuperiorCervicalGanglion10.5
TemporalLobe9.5
Testis21.65
TestisGermCell21.4
TestisIntersitial14.15
TestisLeydigCell15.5
TestisSeminiferousTubule14.55
Thalamus9.35
Thymus6.9
Thyroid10.85
Tongue9.1
Tonsil9.1
Trachea8.45
TrigeminalGanglion9.55
Uterus7.3
UterusCorpus9.6
WholeBlood10.15
Wholebrain7.6
colon9
pineal_day11.2
pineal_night10.08
retina11.05
small_intestine8.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P53025
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.07 ± 0.24
Basal Forebrain6.95 ± 0.2
Basal Part of Pons6.72 ± 0.29
Cerebellar Cortex6.69 ± 0.29
Cerebellar Nuclei6.48 ± 0.53
Claustrum7.01 ± 0.47
Epithalamus6.94 ± 0.22
Frontal Lobe6.59 ± 0.34
Globus Pallidus7 ± 0.24
Hypothalamus6.51 ± 0.38
Insula6.71 ± 0.33
Limbic Lobe6.9 ± 0.31
Mesencephalon6.72 ± 0.47
Myelencephalon6.73 ± 0.38
Occipital Lobe7.04 ± 0.37
Parietal Lobe6.78 ± 0.32
Pontine Tegmentum6.58 ± 0.36
Striatum7.02 ± 0.38
Subthalamus6.72 ± 0.07
Temporal Lobe6.71 ± 0.31
Thalamus6.5 ± 0.32
White Matter7.43 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2810455K09RikCBCerebellum28.55
40.07
2810455K09RikCTXCerebral cortex64.87
49.21
2810455K09RikHIPHippocampal region23.56
27.08
2810455K09RikHPFHippocampal formation25.02
24.3
2810455K09RikHYHypothalamus31.3
25.7
2810455K09RikLSXLateral septal complex59.67
47.71
2810455K09RikMBMidbrain27.29
24.02
2810455K09RikMYMedulla31.27
35.29
2810455K09RikOLFOlfactory bulb67.29
60.48
2810455K09RikPPons28.48
31.88
2810455K09RikPALPallidum31.36
27.45
2810455K09RikRHPRetrohippocampal region28.63
21.41
2810455K09RiksAMYStriatum-like amygdalar nuclei5.11
3
2810455K09RikSTRStriatum28.15
20.67
2810455K09RikSTRdStriatum dorsal region21.83
15.29
2810455K09RikSTRvStriatum ventral region48.81
35.08
2810455K09RikTHThalamus43.13
36.23
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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