AutismKB 2.0

Annotation Detail for CSGALNACT1


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Basic Information Top
Gene Symbol:CSGALNACT1 ( CSGalNAcT-1,ChGn,FLJ11264,FLJ13760,beta4GalNAcT )
Gene Full Name: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Band: 8p21.3
Quick LinksEntrez ID:55790; OMIM: NA; Uniprot ID:CGAT1_HUMAN; ENSEMBL ID: ENSG00000147408; HGNC ID: 24290
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult60 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal111 / 336030733
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone2 / 7165527
bone marrow0 / 488010 
brain54 / 110098949
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye6 / 21105428
heart1 / 8962611
intestine1 / 2344724
kidney3 / 21177714
larynx0 / 241450 
liver3 / 20774314
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland6 / 15327139
mouth1 / 6705214
muscle1 / 1077159
nerve1 / 1576863
ovary1 / 1020519
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta24 / 28082585
prostate6 / 18934531
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis7 / 33044221
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus4 / 23287817
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219049_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.1
Adipocyte9.85
AdrenalCortex20.8
Adrenalgland11.05
Amygdala166.65
Appendix19.65
AtrioventricularNode15.7
BDCA4+_DentriticCells33.65
Bonemarrow44
BronchialEpithelialCells8.15
CD105+_Endothelial12.1
CD14+_Monocytes17.25
CD19+_BCells(neg._sel.)141.75
CD33+_Myeloid14.6
CD34+14.35
CD4+_Tcells83.35
CD56+_NKCells12.3
CD71+_EarlyErythroid10.5
CD8+_Tcells17.85
CardiacMyocytes14.85
Caudatenucleus34.6
Cerebellum9.85
CerebellumPeduncles14.7
CiliaryGanglion31.1
CingulateCortex36.6
Colorectaladenocarcinoma8.85
DorsalRootGanglion18.6
FetalThyroid188.4
Fetalbrain122.45
Fetalliver10.05
Fetallung82.7
GlobusPallidus11.25
Heart17.05
Hypothalamus44.8
Kidney9.95
Leukemia_chronicMyelogenousK-5626.35
Leukemia_promyelocytic-HL-608.4
Leukemialymphoblastic(MOLT-4)5.1
Liver18.35
Lung12.65
Lymphnode48.35
Lymphoma_burkitts(Daudi)14.75
Lymphoma_burkitts(Raji)14.1
MedullaOblongata39.1
OccipitalLobe77.05
OlfactoryBulb13.7
Ovary12.9
Pancreas9.9
PancreaticIslet14.75
ParietalLobe49.25
Pituitary21.8
Placenta273.7
Pons17.3
PrefrontalCortex173.1
Prostate126.6
Salivarygland15.25
SkeletalMuscle20.1
Skin12.9
SmoothMuscle43.65
Spinalcord28.35
SubthalamicNucleus51.4
SuperiorCervicalGanglion22.65
TemporalLobe63.5
Testis10.3
TestisGermCell12.15
TestisIntersitial10.65
TestisLeydigCell18.25
TestisSeminiferousTubule9.3
Thalamus12.85
Thymus9.65
Thyroid907.95
Tongue13.6
Tonsil11.6
Trachea23.2
TrigeminalGanglion18.4
Uterus27.65
UterusCorpus14.2
WholeBlood70.2
Wholebrain65.55
colon9
pineal_day13.58
pineal_night12.76
retina20.7
small_intestine11.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P134835
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.36 ± 0.42
Basal Forebrain8.09 ± 0.24
Basal Part of Pons7.57 ± 0.57
Cerebellar Cortex6.85 ± 0.31
Cerebellar Nuclei6.76 ± 0.54
Claustrum8.02 ± 0.61
Epithalamus8.47 ± 0.61
Frontal Lobe7.73 ± 0.45
Globus Pallidus7.27 ± 0.91
Hypothalamus7.78 ± 0.44
Insula7.87 ± 0.31
Limbic Lobe7.37 ± 0.72
Mesencephalon7.68 ± 0.66
Myelencephalon7.65 ± 0.59
Occipital Lobe7.48 ± 0.82
Parietal Lobe7.73 ± 0.54
Pontine Tegmentum7.36 ± 0.56
Striatum7.16 ± 1.07
Subthalamus6.83 ± 0.61
Temporal Lobe7.93 ± 0.4
Thalamus7.4 ± 0.45
White Matter5.84 ± 0.75
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4732435N03RikCBCerebellum3.23
3.89
4732435N03RikCTXCerebral cortex23.14
16.93
4732435N03RikHIPHippocampal region7.25
7.15
4732435N03RikHPFHippocampal formation7
6.09
4732435N03RikHYHypothalamus1.32
0.93
4732435N03RikLSXLateral septal complex2.71
2.11
4732435N03RikMBMidbrain3.77
3.36
4732435N03RikMYMedulla4.01
4.14
4732435N03RikOLFOlfactory bulb25.12
19.34
4732435N03RikPPons4.3
5.01
4732435N03RikPALPallidum4.11
3.77
4732435N03RikRHPRetrohippocampal region6.42
4.56
4732435N03RiksAMYStriatum-like amygdalar nuclei13.98
9.78
4732435N03RikSTRStriatum7.28
5.34
4732435N03RikSTRdStriatum dorsal region4.42
3.6
4732435N03RikSTRvStriatum ventral region14.82
9.41
4732435N03RikTHThalamus9.34
7.41
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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