Annotation Detail for UTP6
Basic Information Top
| Gene Symbol: | UTP6 ( C17orf40,HCA66 ) |
|---|---|
| Gene Full Name: | UTP6, small subunit (SSU) processome component, homolog (yeast) |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:55813; OMIM: NA; Uniprot ID:UTP6_HUMAN; ENSEMBL ID: ENSG00000108651; HGNC ID: 18279 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.589862
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 17 / 564012 | 30 | |
| neonate | 3 / 31097 | 96 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 101 / 1939121 | 52 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218715_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 163.95 | |
| Adipocyte | 20.75 | |
| AdrenalCortex | 23.75 | |
| Adrenalgland | 18 | |
| Amygdala | 24.5 | |
| Appendix | 22.35 | |
| AtrioventricularNode | 16.95 | |
| BDCA4+_DentriticCells | 131.3 | |
| Bonemarrow | 21.5 | |
| BronchialEpithelialCells | 95.55 | |
| CD105+_Endothelial | 44 | |
| CD14+_Monocytes | 75.1 | |
| CD19+_BCells(neg._sel.) | 126.25 | |
| CD33+_Myeloid | 56.65 | |
| CD34+ | 96.3 | |
| CD4+_Tcells | 94.25 | |
| CD56+_NKCells | 54.25 | |
| CD71+_EarlyErythroid | 22.9 | |
| CD8+_Tcells | 97 | |
| CardiacMyocytes | 40.05 | |
| Caudatenucleus | 19.05 | |
| Cerebellum | 17.1 | |
| CerebellumPeduncles | 23.5 | |
| CiliaryGanglion | 12.9 | |
| CingulateCortex | 22.15 | |
| Colorectaladenocarcinoma | 48.15 | |
| DorsalRootGanglion | 15.55 | |
| FetalThyroid | 32.85 | |
| Fetalbrain | 62.45 | |
| Fetalliver | 18.3 | |
| Fetallung | 40.3 | |
| GlobusPallidus | 14.2 | |
| Heart | 27.15 | |
| Hypothalamus | 26.4 | |
| Kidney | 17.75 | |
| Leukemia_chronicMyelogenousK-562 | 140.55 | |
| Leukemia_promyelocytic-HL-60 | 126 | |
| Leukemialymphoblastic(MOLT-4) | 74.5 | |
| Liver | 28 | |
| Lung | 22.9 | |
| Lymphnode | 59.2 | |
| Lymphoma_burkitts(Daudi) | 168.4 | |
| Lymphoma_burkitts(Raji) | 49.7 | |
| MedullaOblongata | 22.4 | |
| OccipitalLobe | 18.8 | |
| OlfactoryBulb | 32.85 | |
| Ovary | 16.85 | |
| Pancreas | 26.05 | |
| PancreaticIslet | 42.4 | |
| ParietalLobe | 22.6 | |
| Pituitary | 32.45 | |
| Placenta | 27.3 | |
| Pons | 26.25 | |
| PrefrontalCortex | 39.7 | |
| Prostate | 29.7 | |
| Salivarygland | 17.4 | |
| SkeletalMuscle | 39.25 | |
| Skin | 17.65 | |
| SmoothMuscle | 53.75 | |
| Spinalcord | 24.15 | |
| SubthalamicNucleus | 20.15 | |
| SuperiorCervicalGanglion | 26.1 | |
| TemporalLobe | 27.5 | |
| Testis | 31.6 | |
| TestisGermCell | 46.8 | |
| TestisIntersitial | 29.35 | |
| TestisLeydigCell | 37 | |
| TestisSeminiferousTubule | 46.75 | |
| Thalamus | 21.6 | |
| Thymus | 26.1 | |
| Thyroid | 29.85 | |
| Tongue | 21.85 | |
| Tonsil | 43.2 | |
| Trachea | 17.65 | |
| TrigeminalGanglion | 23.1 | |
| Uterus | 20.3 | |
| UterusCorpus | 20.15 | |
| WholeBlood | 39.15 | |
| Wholebrain | 16.8 | |
| colon | 20.8 | |
| pineal_day | 36.2 | |
| pineal_night | 37.88 | |
| retina | 24.85 | |
| small_intestine | 20.15 | |
- Probe name: CUST_844_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.11 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.1 ± 0.1 | |
| Basal Part of Pons | 5.67 ± 0.57 | |
| Cerebellar Cortex | 6.27 ± 0.24 | |
| Cerebellar Nuclei | 5.51 ± 0.45 | |
| Claustrum | 5.58 ± 0.44 | |
| Epithalamus | 5.92 ± 0.38 | |
| Frontal Lobe | 5.83 ± 0.44 | |
| Globus Pallidus | 5.71 ± 0.38 | |
| Hypothalamus | 5.89 ± 0.54 | |
| Insula | 5.98 ± 0.33 | |
| Limbic Lobe | 6 ± 0.44 | |
| Mesencephalon | 5.92 ± 0.41 | |
| Myelencephalon | 5.88 ± 0.44 | |
| Occipital Lobe | 5.96 ± 0.33 | |
| Parietal Lobe | 5.83 ± 0.38 | |
| Pontine Tegmentum | 5.81 ± 0.45 | |
| Striatum | 5.8 ± 0.33 | |
| Subthalamus | 5.85 ± 0.36 | |
| Temporal Lobe | 6.02 ± 0.43 | |
| Thalamus | 5.73 ± 0.44 | |
| White Matter | 6.77 ± 0.55 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Utp6 | CB | Cerebellum | 26.55 | |
| 40.39 | | |||
| Utp6 | CTX | Cerebral cortex | 53.13 | |
| 39.62 | | |||
| Utp6 | HIP | Hippocampal region | 37.13 | |
| 49.15 | | |||
| Utp6 | HPF | Hippocampal formation | 42.68 | |
| 47.1 | | |||
| Utp6 | HY | Hypothalamus | 33.64 | |
| 25.86 | | |||
| Utp6 | LSX | Lateral septal complex | 21.8 | |
| 14.18 | | |||
| Utp6 | MB | Midbrain | 31.18 | |
| 29.61 | | |||
| Utp6 | MY | Medulla | 55.48 | |
| 68.85 | | |||
| Utp6 | OLF | Olfactory bulb | 52.05 | |
| 41.73 | | |||
| Utp6 | P | Pons | 40.54 | |
| 45.08 | | |||
| Utp6 | PAL | Pallidum | 37.74 | |
| 35.59 | | |||
| Utp6 | RHP | Retrohippocampal region | 56.06 | |
| 45.47 | | |||
| Utp6 | sAMY | Striatum-like amygdalar nuclei | 38.94 | |
| 29.65 | | |||
| Utp6 | STR | Striatum | 38.21 | |
| 27.37 | | |||
| Utp6 | STRd | Striatum dorsal region | 37.81 | |
| 26.69 | | |||
| Utp6 | STRv | Striatum ventral region | 45.04 | |
| 32.22 | | |||
| Utp6 | TH | Thalamus | 44.91 | |
| 38.79 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00064091 | 16 | 203 | 218 | ASMDVENPDYSEEILK | Peptide Atlas |
| UTP6_HUMAN_2 | 7 | 2 | 8 | AEIIQER | PRIDE |