AutismKB 2.0

Annotation Detail for UTP6


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Basic Information Top
Gene Symbol:UTP6 ( C17orf40,HCA66 )
Gene Full Name: UTP6, small subunit (SSU) processome component, homolog (yeast)
Band: 17q11.2
Quick LinksEntrez ID:55813; OMIM: NA; Uniprot ID:UTP6_HUMAN; ENSEMBL ID: ENSG00000108651; HGNC ID: 18279
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus17 / 56401230
neonate3 / 3109796
infant0 / 236200 
juvenile2 / 5555635
adult101 / 193912152
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor9 / 9417895
cervical tumor3 / 3436687
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor2 / 17290115
gastrointestinal tumor8 / 11936967
germ cell tumor15 / 26384556
glioma1 / 1068839
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor5 / 9635951
lung tumor2 / 10312719
lymphoma5 / 7175569
non-neoplasia3 / 9725030
normal86 / 336030725
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor6 / 12494948
soft tissue/muscle tissue tumor37 / 125191295
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites2 / 4001549
bladder3 / 29757100
blood5 / 12347840
bone2 / 7165527
bone marrow1 / 4880120
brain29 / 110098926
cervix5 / 48171103
connective tissue36 / 149255241
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus2 / 2020998
eye3 / 21105414
heart4 / 8962644
intestine6 / 23447225
kidney13 / 21177761
larynx2 / 2414582
liver9 / 20774343
lung2 / 3369745
lymph1 / 4427022
lymph node4 / 9161043
mammary gland14 / 15327191
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta13 / 28082546
prostate2 / 18934510
salivary gland0 / 201550 
skin9 / 21057442
spleen1 / 5395218
stomach6 / 9661962
testis10 / 33044230
thymus7 / 8113186
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord2 / 13680146
uterus10 / 23287842
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218715_at
Cell line Expression level Expression bar
721_B_lymphoblasts163.95
Adipocyte20.75
AdrenalCortex23.75
Adrenalgland18
Amygdala24.5
Appendix22.35
AtrioventricularNode16.95
BDCA4+_DentriticCells131.3
Bonemarrow21.5
BronchialEpithelialCells95.55
CD105+_Endothelial44
CD14+_Monocytes75.1
CD19+_BCells(neg._sel.)126.25
CD33+_Myeloid56.65
CD34+96.3
CD4+_Tcells94.25
CD56+_NKCells54.25
CD71+_EarlyErythroid22.9
CD8+_Tcells97
CardiacMyocytes40.05
Caudatenucleus19.05
Cerebellum17.1
CerebellumPeduncles23.5
CiliaryGanglion12.9
CingulateCortex22.15
Colorectaladenocarcinoma48.15
DorsalRootGanglion15.55
FetalThyroid32.85
Fetalbrain62.45
Fetalliver18.3
Fetallung40.3
GlobusPallidus14.2
Heart27.15
Hypothalamus26.4
Kidney17.75
Leukemia_chronicMyelogenousK-562140.55
Leukemia_promyelocytic-HL-60126
Leukemialymphoblastic(MOLT-4)74.5
Liver28
Lung22.9
Lymphnode59.2
Lymphoma_burkitts(Daudi)168.4
Lymphoma_burkitts(Raji)49.7
MedullaOblongata22.4
OccipitalLobe18.8
OlfactoryBulb32.85
Ovary16.85
Pancreas26.05
PancreaticIslet42.4
ParietalLobe22.6
Pituitary32.45
Placenta27.3
Pons26.25
PrefrontalCortex39.7
Prostate29.7
Salivarygland17.4
SkeletalMuscle39.25
Skin17.65
SmoothMuscle53.75
Spinalcord24.15
SubthalamicNucleus20.15
SuperiorCervicalGanglion26.1
TemporalLobe27.5
Testis31.6
TestisGermCell46.8
TestisIntersitial29.35
TestisLeydigCell37
TestisSeminiferousTubule46.75
Thalamus21.6
Thymus26.1
Thyroid29.85
Tongue21.85
Tonsil43.2
Trachea17.65
TrigeminalGanglion23.1
Uterus20.3
UterusCorpus20.15
WholeBlood39.15
Wholebrain16.8
colon20.8
pineal_day36.2
pineal_night37.88
retina24.85
small_intestine20.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_844_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.11 ± 0.46
Basal Forebrain6.1 ± 0.1
Basal Part of Pons5.67 ± 0.57
Cerebellar Cortex6.27 ± 0.24
Cerebellar Nuclei5.51 ± 0.45
Claustrum5.58 ± 0.44
Epithalamus5.92 ± 0.38
Frontal Lobe5.83 ± 0.44
Globus Pallidus5.71 ± 0.38
Hypothalamus5.89 ± 0.54
Insula5.98 ± 0.33
Limbic Lobe6 ± 0.44
Mesencephalon5.92 ± 0.41
Myelencephalon5.88 ± 0.44
Occipital Lobe5.96 ± 0.33
Parietal Lobe5.83 ± 0.38
Pontine Tegmentum5.81 ± 0.45
Striatum5.8 ± 0.33
Subthalamus5.85 ± 0.36
Temporal Lobe6.02 ± 0.43
Thalamus5.73 ± 0.44
White Matter6.77 ± 0.55
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Utp6CBCerebellum26.55
40.39
Utp6CTXCerebral cortex53.13
39.62
Utp6HIPHippocampal region37.13
49.15
Utp6HPFHippocampal formation42.68
47.1
Utp6HYHypothalamus33.64
25.86
Utp6LSXLateral septal complex21.8
14.18
Utp6MBMidbrain31.18
29.61
Utp6MYMedulla55.48
68.85
Utp6OLFOlfactory bulb52.05
41.73
Utp6PPons40.54
45.08
Utp6PALPallidum37.74
35.59
Utp6RHPRetrohippocampal region56.06
45.47
Utp6sAMYStriatum-like amygdalar nuclei38.94
29.65
Utp6STRStriatum38.21
27.37
Utp6STRdStriatum dorsal region37.81
26.69
Utp6STRvStriatum ventral region45.04
32.22
Utp6THThalamus44.91
38.79
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064091 16 203 218 ASMDVENPDYSEEILK Peptide Atlas
UTP6_HUMAN_2 7 2 8 AEIIQER PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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