AutismKB 2.0

Annotation Detail for TSNAXIP1


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Basic Information Top
Gene Symbol:TSNAXIP1 ( MGC111443,TXI1 )
Gene Full Name: translin-associated factor X interacting protein 1
Band: 16q22.1
Quick LinksEntrez ID:55815; OMIM: 607720; Uniprot ID:TXIP1_HUMAN; ENSEMBL ID: ENSG00000102904; HGNC ID: 18586
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal40 / 336030711
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone4 / 7165555
bone marrow0 / 488010 
brain12 / 110098910
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney3 / 21177714
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach1 / 9661910
testis21 / 33044263
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222220_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.7
Adipocyte5.55
AdrenalCortex5.65
Adrenalgland4.75
Amygdala5.85
Appendix5.5
AtrioventricularNode4.1
BDCA4+_DentriticCells6.2
Bonemarrow5.4
BronchialEpithelialCells5.5
CD105+_Endothelial5.55
CD14+_Monocytes5.85
CD19+_BCells(neg._sel.)5.9
CD33+_Myeloid5.35
CD34+6.8
CD4+_Tcells5.9
CD56+_NKCells5.35
CD71+_EarlyErythroid5.2
CD8+_Tcells5.2
CardiacMyocytes7.75
Caudatenucleus5.05
Cerebellum5.9
CerebellumPeduncles7.3
CiliaryGanglion3.8
CingulateCortex6.5
Colorectaladenocarcinoma5.6
DorsalRootGanglion4.2
FetalThyroid5.4
Fetalbrain6.25
Fetalliver6.1
Fetallung5.25
GlobusPallidus4.35
Heart7
Hypothalamus6.25
Kidney4.4
Leukemia_chronicMyelogenousK-5625.05
Leukemia_promyelocytic-HL-604.8
Leukemialymphoblastic(MOLT-4)4.5
Liver7.55
Lung6.35
Lymphnode4.85
Lymphoma_burkitts(Daudi)7.05
Lymphoma_burkitts(Raji)7.8
MedullaOblongata5.25
OccipitalLobe5
OlfactoryBulb4.35
Ovary3.7
Pancreas4.4
PancreaticIslet5.9
ParietalLobe6.35
Pituitary7.5
Placenta5.05
Pons6.05
PrefrontalCortex7.05
Prostate6.65
Salivarygland4.35
SkeletalMuscle7.65
Skin4.2
SmoothMuscle6.25
Spinalcord5.85
SubthalamicNucleus5.5
SuperiorCervicalGanglion6.25
TemporalLobe5.1
Testis36.5
TestisGermCell33.2
TestisIntersitial24.35
TestisLeydigCell16.25
TestisSeminiferousTubule28.55
Thalamus6
Thymus4.45
Thyroid7
Tongue5.3
Tonsil6
Trachea4.65
TrigeminalGanglion5.95
Uterus4.55
UterusCorpus5
WholeBlood6
Wholebrain4.85
colon5.55
pineal_day6.88
pineal_night6.64
retina7.475
small_intestine5.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5251_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.64 ± 0.67
Basal Forebrain3.57 ± 0.56
Basal Part of Pons3.98 ± 0.63
Cerebellar Cortex3.62 ± 0.51
Cerebellar Nuclei3.37 ± 0.59
Claustrum3.47 ± 0.76
Epithalamus5.27 ± 1.01
Frontal Lobe3.78 ± 0.72
Globus Pallidus2.81 ± 0.56
Hypothalamus3.2 ± 0.66
Insula3.89 ± 0.47
Limbic Lobe3.65 ± 0.74
Mesencephalon3.63 ± 0.69
Myelencephalon3.73 ± 0.76
Occipital Lobe3.61 ± 0.47
Parietal Lobe3.84 ± 0.67
Pontine Tegmentum3.44 ± 0.6
Striatum3.77 ± 0.95
Subthalamus3.36 ± 0.66
Temporal Lobe3.8 ± 0.62
Thalamus3.53 ± 0.54
White Matter1.89 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tsnaxip1CBCerebellum0
0
Tsnaxip1CTXCerebral cortex0
0
Tsnaxip1HIPHippocampal region0
0
Tsnaxip1HPFHippocampal formation0
0
Tsnaxip1HYHypothalamus0
0
Tsnaxip1LSXLateral septal complex0
0
Tsnaxip1MBMidbrain0
0
Tsnaxip1MYMedulla0
0
Tsnaxip1OLFOlfactory bulb0
0
Tsnaxip1PPons0
0
Tsnaxip1PALPallidum0
0
Tsnaxip1RHPRetrohippocampal region0
0
Tsnaxip1sAMYStriatum-like amygdalar nuclei0
0
Tsnaxip1STRStriatum0
0
Tsnaxip1STRdStriatum dorsal region0
0
Tsnaxip1STRvStriatum ventral region0
0
Tsnaxip1THThalamus0
0
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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