AutismKB 2.0

Annotation Detail for UBAP2


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Basic Information Top
Gene Symbol:UBAP2 ( FLJ22435,FLJ43947,FLJ46567,KIAA1491,UBAP-2,bA176F3.5 )
Gene Full Name: ubiquitin associated protein 2
Band: 9p13.3
Quick LinksEntrez ID:55833; OMIM: NA; Uniprot ID:UBAP2_HUMAN; ENSEMBL ID: ENSG00000137073; HGNC ID: 14185
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst7 / 62319112
fetus32 / 56401256
neonate6 / 31097192
infant0 / 236200 
juvenile2 / 5555635
adult119 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma6 / 8282372
colorectal tumor12 / 114246105
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor34 / 263845128
glioma5 / 10688346
head and neck tumor14 / 136302102
kidney tumor4 / 6895958
leukemia7 / 9584273
liver tumor6 / 9635962
lung tumor5 / 10312748
lymphoma8 / 71755111
non-neoplasia1 / 9725010
normal183 / 336030754
ovarian tumor1 / 7668213
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer6 / 10268058
retinoblastoma1 / 4635621
skin tumor11 / 12494988
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder2 / 2975767
blood7 / 12347856
bone4 / 7165555
bone marrow0 / 488010 
brain68 / 110098961
cervix5 / 48171103
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue14 / 21572264
esophagus0 / 202090 
eye11 / 21105452
heart1 / 8962611
intestine17 / 23447272
kidney9 / 21177742
larynx1 / 2414541
liver14 / 20774367
lung14 / 33697441
lymph8 / 44270180
lymph node7 / 9161076
mammary gland8 / 15327152
mouth7 / 67052104
muscle9 / 10771583
nerve2 / 15768126
ovary2 / 10205119
pancreas7 / 21481232
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta9 / 28082532
prostate11 / 18934558
salivary gland2 / 2015599
skin12 / 21057456
spleen1 / 5395218
stomach2 / 9661920
testis52 / 330442157
thymus13 / 81131160
thyroid7 / 47473147
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord6 / 13680438
uterus13 / 23287855
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221839_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts365.9
Adipocyte34.9
AdrenalCortex48.6
Adrenalgland84.5
Amygdala52.15
Appendix24.65
AtrioventricularNode32.75
BDCA4+_DentriticCells82.2
Bonemarrow57.1
BronchialEpithelialCells73.95
CD105+_Endothelial289.75
CD14+_Monocytes41.25
CD19+_BCells(neg._sel.)43
CD33+_Myeloid75.8
CD34+545.35
CD4+_Tcells78.6
CD56+_NKCells131.15
CD71+_EarlyErythroid212.9
CD8+_Tcells70.7
CardiacMyocytes43.85
Caudatenucleus29.3
Cerebellum36.55
CerebellumPeduncles25.05
CiliaryGanglion13
CingulateCortex43.3
Colorectaladenocarcinoma213.5
DorsalRootGanglion25.15
FetalThyroid165.4
Fetalbrain63.2
Fetalliver54.5
Fetallung46
GlobusPallidus30.7
Heart61.75
Hypothalamus38.95
Kidney36.25
Leukemia_chronicMyelogenousK-56262.8
Leukemia_promyelocytic-HL-60104.9
Leukemialymphoblastic(MOLT-4)106.6
Liver40.65
Lung208.8
Lymphnode41
Lymphoma_burkitts(Daudi)103.85
Lymphoma_burkitts(Raji)387.3
MedullaOblongata28.05
OccipitalLobe19.9
OlfactoryBulb53.9
Ovary12
Pancreas45.55
PancreaticIslet47.2
ParietalLobe38.35
Pituitary32.65
Placenta52.95
Pons22.95
PrefrontalCortex58.7
Prostate157.85
Salivarygland31.2
SkeletalMuscle64.25
Skin25
SmoothMuscle46.4
Spinalcord43.05
SubthalamicNucleus27.25
SuperiorCervicalGanglion36.7
TemporalLobe29.95
Testis221.05
TestisGermCell148.35
TestisIntersitial136.3
TestisLeydigCell87.65
TestisSeminiferousTubule124.15
Thalamus26.65
Thymus207.25
Thyroid116.7
Tongue43.75
Tonsil44.65
Trachea40.95
TrigeminalGanglion17.45
Uterus66.8
UterusCorpus29.85
WholeBlood21.4
Wholebrain45
colon32.2
pineal_day68.96
pineal_night61.04
retina54.9
small_intestine39.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1497_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.9 ± 0.99
Basal Forebrain2.62 ± 0.92
Basal Part of Pons2.23 ± 0.64
Cerebellar Cortex2.59 ± 0.76
Cerebellar Nuclei2.64 ± 0.75
Claustrum2.97 ± 0.67
Epithalamus2.25 ± 0.61
Frontal Lobe2.51 ± 0.67
Globus Pallidus2.39 ± 0.57
Hypothalamus2.43 ± 0.58
Insula2.38 ± 0.6
Limbic Lobe2.38 ± 0.72
Mesencephalon2.56 ± 0.67
Myelencephalon2.49 ± 0.67
Occipital Lobe1.97 ± 0.72
Parietal Lobe2.47 ± 0.66
Pontine Tegmentum2.46 ± 0.64
Striatum2.03 ± 0.61
Subthalamus2.59 ± 0.71
Temporal Lobe2.51 ± 0.71
Thalamus2.42 ± 0.58
White Matter2 ± 0.33
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00011091 18 67 84 NQDECIVALHDCNGDVNK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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