AutismKB 2.0

Annotation Detail for C3orf10


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Basic Information Top
Gene Symbol:C3orf10 ( MDS027,hHBrk1 )
Gene Full Name: chromosome 3 open reading frame 10
Band: 3p25.3
Quick LinksEntrez ID:55845; OMIM: 611183; Uniprot ID:BRK1_HUMAN; ENSEMBL ID: ; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst3 / 6231948
fetus44 / 56401278
neonate2 / 3109764
infant0 / 236200 
juvenile6 / 55556107
adult204 / 1939121105
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma5 / 17475286
breast (mammary gland) tumor9 / 9417895
cervical tumor4 / 34366116
chondrosarcoma8 / 8282396
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor10 / 11936983
germ cell tumor16 / 26384560
glioma10 / 10688393
head and neck tumor10 / 13630273
kidney tumor14 / 68959203
leukemia16 / 95842166
liver tumor16 / 96359166
lung tumor10 / 10312796
lymphoma8 / 71755111
non-neoplasia3 / 9725030
normal342 / 3360307101
ovarian tumor5 / 7668265
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer10 / 10268097
retinoblastoma7 / 46356151
skin tumor11 / 12494988
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland4 / 33197120
ascites5 / 40015124
bladder5 / 29757168
blood21 / 123478170
bone2 / 7165527
bone marrow12 / 48801245
brain89 / 110098980
cervix4 / 4817183
connective tissue15 / 149255100
ear3 / 16212185
embryonic tissue22 / 215722101
esophagus0 / 202090 
eye28 / 211054132
heart12 / 89626133
intestine16 / 23447268
kidney24 / 211777113
larynx1 / 2414541
liver22 / 207743105
lung55 / 336974163
lymph6 / 44270135
lymph node7 / 9161076
mammary gland12 / 15327178
mouth1 / 6705214
muscle10 / 10771592
nerve1 / 1576863
ovary6 / 10205158
pancreas28 / 214812130
parathyroid3 / 20539146
pharynx12 / 41328290
pituitary gland1 / 1658560
placenta19 / 28082567
prostate25 / 189345132
salivary gland2 / 2015599
skin34 / 210574161
spleen3 / 5395255
stomach10 / 96619103
testis35 / 330442105
thymus3 / 8113136
thyroid7 / 47473147
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord2 / 13680146
uterus25 / 232878107
vascular5 / 5178096
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P919633
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.95 ± 1.05
Basal Forebrain1.37 ± 0.24
Basal Part of Pons1.5 ± 0.52
Cerebellar Cortex1.53 ± 0.64
Cerebellar Nuclei1.8 ± 0.74
Claustrum2.03 ± 0.61
Epithalamus1.4 ± 0.56
Frontal Lobe1.7 ± 0.65
Globus Pallidus1.45 ± 0.59
Hypothalamus1.68 ± 0.65
Insula1.33 ± 0.68
Limbic Lobe1.54 ± 0.68
Mesencephalon1.75 ± 0.79
Myelencephalon1.58 ± 0.59
Occipital Lobe1.33 ± 0.59
Parietal Lobe1.5 ± 0.61
Pontine Tegmentum1.65 ± 0.67
Striatum1.52 ± 0.62
Subthalamus1.7 ± 0.68
Temporal Lobe1.58 ± 0.74
Thalamus1.53 ± 0.61
White Matter1.55 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
6720456B07RikCBCerebellum44.56
63.21
6720456B07RikCTXCerebral cortex100
100
6720456B07RikHIPHippocampal region100
100
6720456B07RikHPFHippocampal formation100
100
6720456B07RikHYHypothalamus97.3
98.03
6720456B07RikLSXLateral septal complex100
100
6720456B07RikMBMidbrain84.77
88.01
6720456B07RikMYMedulla46.9
52.53
6720456B07RikOLFOlfactory bulb100
100
6720456B07RikPPons67.78
80.22
6720456B07RikPALPallidum93.44
100
6720456B07RikRHPRetrohippocampal region100
100
6720456B07RiksAMYStriatum-like amygdalar nuclei100
100
6720456B07RikSTRStriatum100
100
6720456B07RikSTRdStriatum dorsal region100
100
6720456B07RikSTRvStriatum ventral region100
100
6720456B07RikTHThalamus94.14
99.31
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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