AutismKB 2.0

Annotation Detail for PRKG2


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Basic Information Top
Gene Symbol:PRKG2 ( PRKGR2,cGKII )
Gene Full Name: protein kinase, cGMP-dependent, type II
Band: 4q21.21
Quick LinksEntrez ID:5593; OMIM: 601591; Uniprot ID:KGP2_HUMAN; ENSEMBL ID: ENSG00000138669; HGNC ID: 9416
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult2 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor5 / 13630236
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal12 / 33603073
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth5 / 6705274
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207505_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.6
Adipocyte9.4
AdrenalCortex14.15
Adrenalgland10.85
Amygdala8.75
Appendix14.1
AtrioventricularNode15.8
BDCA4+_DentriticCells10.05
Bonemarrow10.6
BronchialEpithelialCells9.2
CD105+_Endothelial10
CD14+_Monocytes10.2
CD19+_BCells(neg._sel.)9.95
CD33+_Myeloid11.85
CD34+13.5
CD4+_Tcells10.1
CD56+_NKCells11.2
CD71+_EarlyErythroid9.3
CD8+_Tcells8.95
CardiacMyocytes20.95
Caudatenucleus8.9
Cerebellum8.15
CerebellumPeduncles11.2
CiliaryGanglion13.35
CingulateCortex10.85
Colorectaladenocarcinoma9.75
DorsalRootGanglion10.45
FetalThyroid9.6
Fetalbrain9.55
Fetalliver9.9
Fetallung7.85
GlobusPallidus8.75
Heart15.5
Hypothalamus10.7
Kidney9.85
Leukemia_chronicMyelogenousK-5629.35
Leukemia_promyelocytic-HL-608.75
Leukemialymphoblastic(MOLT-4)7.7
Liver13
Lung10.2
Lymphnode8.75
Lymphoma_burkitts(Daudi)15.45
Lymphoma_burkitts(Raji)14.35
MedullaOblongata9
OccipitalLobe8.85
OlfactoryBulb7.6
Ovary9.4
Pancreas8.95
PancreaticIslet11
ParietalLobe10.85
Pituitary16.2
Placenta9.2
Pons10.6
PrefrontalCortex11.55
Prostate10.85
Salivarygland14.55
SkeletalMuscle19.8
Skin12.15
SmoothMuscle10.95
Spinalcord10.8
SubthalamicNucleus9.3
SuperiorCervicalGanglion22.5
TemporalLobe9.75
Testis11.6
TestisGermCell7.95
TestisIntersitial8.3
TestisLeydigCell10.2
TestisSeminiferousTubule10.35
Thalamus10.1
Thymus7.3
Thyroid11.4
Tongue13.45
Tonsil9.6
Trachea8.25
TrigeminalGanglion13.75
Uterus7.45
UterusCorpus13.35
WholeBlood10.25
Wholebrain7.7
colon9.5
pineal_day11.68
pineal_night11.84
retina11.4
small_intestine9.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11310_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.4 ± 0.45
Basal Forebrain5.12 ± 0.38
Basal Part of Pons6.58 ± 0.38
Cerebellar Cortex4.44 ± 0.59
Cerebellar Nuclei5.07 ± 0.68
Claustrum5.13 ± 0.57
Epithalamus5.14 ± 0.97
Frontal Lobe5.35 ± 0.7
Globus Pallidus4.73 ± 0.99
Hypothalamus4.8 ± 0.73
Insula5.48 ± 0.43
Limbic Lobe5.18 ± 0.76
Mesencephalon4.99 ± 0.71
Myelencephalon5.35 ± 0.81
Occipital Lobe5.78 ± 0.67
Parietal Lobe5.47 ± 0.82
Pontine Tegmentum5.06 ± 0.81
Striatum4.45 ± 1.31
Subthalamus6.02 ± 0.17
Temporal Lobe5.56 ± 0.52
Thalamus6.31 ± 0.6
White Matter4.58 ± 0.54
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Prkg2CBCerebellum0.91
1.53
Prkg2CTXCerebral cortex1.48
1.18
Prkg2HIPHippocampal region0.24
0.3
Prkg2HPFHippocampal formation1.75
1.6
Prkg2HYHypothalamus0.45
0.47
Prkg2LSXLateral septal complex4.38
3.62
Prkg2MBMidbrain0.6
0.62
Prkg2MYMedulla0.37
0.41
Prkg2OLFOlfactory bulb8.45
6.64
Prkg2PPons1.04
1.2
Prkg2PALPallidum0.5
0.46
Prkg2RHPRetrohippocampal region3.47
2.8
Prkg2sAMYStriatum-like amygdalar nuclei0.57
0.4
Prkg2STRStriatum0.54
0.44
Prkg2STRdStriatum dorsal region0.17
0.16
Prkg2STRvStriatum ventral region0.52
0.38
Prkg2THThalamus10.22
8.06
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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