AutismKB 2.0

Annotation Detail for APOM


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Basic Information Top
Gene Symbol:APOM ( G3a,HSPC336,MGC22400,NG20 )
Gene Full Name: apolipoprotein M
Band: 6p21.33
Quick LinksEntrez ID:55937; OMIM: 606907; Uniprot ID:APOM_HUMAN; ENSEMBL ID: ENSG00000204444; HGNC ID: 13916
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus50 / 56401288
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult42 / 193912121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma6 / 10688356
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor17 / 96359176
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal102 / 336030730
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone0 / 716550 
bone marrow0 / 488010 
brain9 / 11009898
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye2 / 2110549
heart4 / 8962644
intestine0 / 2344720 
kidney5 / 21177723
larynx0 / 241450 
liver42 / 207743202
lung8 / 33697423
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205682_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.15
Adipocyte15.75
AdrenalCortex16.3
Adrenalgland12.3
Amygdala16.5
Appendix19.65
AtrioventricularNode11.25
BDCA4+_DentriticCells11.2
Bonemarrow15.75
BronchialEpithelialCells17.45
CD105+_Endothelial12.35
CD14+_Monocytes15.8
CD19+_BCells(neg._sel.)16
CD33+_Myeloid12
CD34+8.55
CD4+_Tcells16.65
CD56+_NKCells17
CD71+_EarlyErythroid30.65
CD8+_Tcells13.8
CardiacMyocytes28.65
Caudatenucleus13.45
Cerebellum12.95
CerebellumPeduncles17.6
CiliaryGanglion12.25
CingulateCortex10
Colorectaladenocarcinoma18.15
DorsalRootGanglion11.15
FetalThyroid15.4
Fetalbrain28
Fetalliver1546.9
Fetallung62.4
GlobusPallidus8.7
Heart40.5
Hypothalamus14.75
Kidney1208.55
Leukemia_chronicMyelogenousK-56225.95
Leukemia_promyelocytic-HL-6014.15
Leukemialymphoblastic(MOLT-4)18.4
Liver2078.95
Lung25.15
Lymphnode15.35
Lymphoma_burkitts(Daudi)21.9
Lymphoma_burkitts(Raji)29.05
MedullaOblongata13.65
OccipitalLobe12.25
OlfactoryBulb10.65
Ovary26.35
Pancreas13.1
PancreaticIslet22.45
ParietalLobe14.1
Pituitary18.1
Placenta17.4
Pons18.1
PrefrontalCortex15.35
Prostate30.75
Salivarygland13.25
SkeletalMuscle19.8
Skin13.4
SmoothMuscle18.2
Spinalcord17.6
SubthalamicNucleus10.4
SuperiorCervicalGanglion20.35
TemporalLobe13.45
Testis34.5
TestisGermCell20.7
TestisIntersitial20.9
TestisLeydigCell39.65
TestisSeminiferousTubule28.65
Thalamus14.05
Thymus16.5
Thyroid30.2
Tongue15.75
Tonsil20.1
Trachea18.45
TrigeminalGanglion32.1
Uterus15.15
UterusCorpus28.55
WholeBlood17.45
Wholebrain13.45
colon15.3
pineal_day13.46
pineal_night13.7
retina21.7
small_intestine16.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P89426
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.01 ± 0.54
Basal Forebrain3.76 ± 0.35
Basal Part of Pons3.66 ± 0.56
Cerebellar Cortex3.39 ± 0.48
Cerebellar Nuclei3.67 ± 0.56
Claustrum3.14 ± 0.59
Epithalamus4.82 ± 0.59
Frontal Lobe3.75 ± 0.49
Globus Pallidus5 ± 0.32
Hypothalamus3.87 ± 0.61
Insula3.9 ± 0.31
Limbic Lobe3.64 ± 0.59
Mesencephalon3.95 ± 0.59
Myelencephalon3.81 ± 0.56
Occipital Lobe3.48 ± 0.52
Parietal Lobe3.75 ± 0.52
Pontine Tegmentum3.77 ± 0.59
Striatum4.35 ± 0.47
Subthalamus3.87 ± 0.23
Temporal Lobe3.74 ± 0.53
Thalamus3.88 ± 0.46
White Matter4.58 ± 0.51
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
ApomCBCerebellum5.8
5.75
ApomCTXCerebral cortex13.67
8.91
ApomHIPHippocampal region9.83
8.2
ApomHPFHippocampal formation9.05
7.02
ApomHYHypothalamus4.76
3.66
ApomLSXLateral septal complex5.54
4.88
ApomMBMidbrain4.73
4.24
ApomMYMedulla13.75
14.66
ApomOLFOlfactory bulb36.78
25.65
ApomPPons11.86
13.06
ApomPALPallidum6.29
4.86
ApomRHPRetrohippocampal region7.58
5.29
ApomsAMYStriatum-like amygdalar nuclei2.69
1.74
ApomSTRStriatum6.77
4.47
ApomSTRdStriatum dorsal region5.31
3.44
ApomSTRvStriatum ventral region15.15
9.04
ApomTHThalamus10.96
8.08
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00026334 14 99 112 KWIYHLTEGSTDLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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