Annotation Detail for APOM


Gene Symbol: | APOM ( G3a,HSPC336,MGC22400,NG20 ) |
---|---|
Gene Full Name: | apolipoprotein M |
Band: | 6p21.33 |
Quick Links | Entrez ID:55937; OMIM: 606907; Uniprot ID:APOM_HUMAN; ENSEMBL ID: ENSG00000204444; HGNC ID: 13916 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.534468
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 1 / 70761 | 14 | ![]() |
blastocyst | 0 / 62319 | 0 | |
fetus | 50 / 564012 | 88 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 42 / 1939121 | 21 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 0 / 119369 | 0 | |
germ cell tumor | 4 / 263845 | 15 | ![]() |
glioma | 6 / 106883 | 56 | ![]() |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 1 / 95842 | 10 | ![]() |
liver tumor | 17 / 96359 | 176 | ![]() |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 0 / 97250 | 0 | |
normal | 102 / 3360307 | 30 | ![]() |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 1 / 46356 | 21 | ![]() |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 1 / 90257 | 11 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 3 / 123478 | 24 | ![]() |
bone | 0 / 71655 | 0 | |
bone marrow | 0 / 48801 | 0 | |
brain | 9 / 1100989 | 8 | ![]() |
cervix | 0 / 48171 | 0 | |
connective tissue | 0 / 149255 | 0 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 4 / 215722 | 18 | ![]() |
esophagus | 0 / 20209 | 0 | |
eye | 2 / 211054 | 9 | ![]() |
heart | 4 / 89626 | 44 | ![]() |
intestine | 0 / 234472 | 0 | |
kidney | 5 / 211777 | 23 | ![]() |
larynx | 0 / 24145 | 0 | |
liver | 42 / 207743 | 202 | ![]() |
lung | 8 / 336974 | 23 | ![]() |
lymph | 0 / 44270 | 0 | |
lymph node | 1 / 91610 | 10 | ![]() |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 0 / 102051 | 0 | |
pancreas | 0 / 214812 | 0 | |
parathyroid | 2 / 20539 | 97 | ![]() |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 0 / 280825 | 0 | |
prostate | 1 / 189345 | 5 | ![]() |
salivary gland | 0 / 20155 | 0 | |
skin | 0 / 210574 | 0 | |
spleen | 1 / 53952 | 18 | ![]() |
stomach | 0 / 96619 | 0 | |
testis | 5 / 330442 | 15 | ![]() |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 1 / 16999 | 58 | ![]() |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 1 / 232878 | 4 | ![]() |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205682_x_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 17.15 | ![]() |
Adipocyte | 15.75 | ![]() |
AdrenalCortex | 16.3 | ![]() |
Adrenalgland | 12.3 | ![]() |
Amygdala | 16.5 | ![]() |
Appendix | 19.65 | ![]() |
AtrioventricularNode | 11.25 | ![]() |
BDCA4+_DentriticCells | 11.2 | ![]() |
Bonemarrow | 15.75 | ![]() |
BronchialEpithelialCells | 17.45 | ![]() |
CD105+_Endothelial | 12.35 | ![]() |
CD14+_Monocytes | 15.8 | ![]() |
CD19+_BCells(neg._sel.) | 16 | ![]() |
CD33+_Myeloid | 12 | ![]() |
CD34+ | 8.55 | ![]() |
CD4+_Tcells | 16.65 | ![]() |
CD56+_NKCells | 17 | ![]() |
CD71+_EarlyErythroid | 30.65 | ![]() |
CD8+_Tcells | 13.8 | ![]() |
CardiacMyocytes | 28.65 | ![]() |
Caudatenucleus | 13.45 | ![]() |
Cerebellum | 12.95 | ![]() |
CerebellumPeduncles | 17.6 | ![]() |
CiliaryGanglion | 12.25 | ![]() |
CingulateCortex | 10 | ![]() |
Colorectaladenocarcinoma | 18.15 | ![]() |
DorsalRootGanglion | 11.15 | ![]() |
FetalThyroid | 15.4 | ![]() |
Fetalbrain | 28 | ![]() |
Fetalliver | 1546.9 | ![]() |
Fetallung | 62.4 | ![]() |
GlobusPallidus | 8.7 | ![]() |
Heart | 40.5 | ![]() |
Hypothalamus | 14.75 | ![]() |
Kidney | 1208.55 | ![]() |
Leukemia_chronicMyelogenousK-562 | 25.95 | ![]() |
Leukemia_promyelocytic-HL-60 | 14.15 | ![]() |
Leukemialymphoblastic(MOLT-4) | 18.4 | ![]() |
Liver | 2078.95 | ![]() |
Lung | 25.15 | ![]() |
Lymphnode | 15.35 | ![]() |
Lymphoma_burkitts(Daudi) | 21.9 | ![]() |
Lymphoma_burkitts(Raji) | 29.05 | ![]() |
MedullaOblongata | 13.65 | ![]() |
OccipitalLobe | 12.25 | ![]() |
OlfactoryBulb | 10.65 | ![]() |
Ovary | 26.35 | ![]() |
Pancreas | 13.1 | ![]() |
PancreaticIslet | 22.45 | ![]() |
ParietalLobe | 14.1 | ![]() |
Pituitary | 18.1 | ![]() |
Placenta | 17.4 | ![]() |
Pons | 18.1 | ![]() |
PrefrontalCortex | 15.35 | ![]() |
Prostate | 30.75 | ![]() |
Salivarygland | 13.25 | ![]() |
SkeletalMuscle | 19.8 | ![]() |
Skin | 13.4 | ![]() |
SmoothMuscle | 18.2 | ![]() |
Spinalcord | 17.6 | ![]() |
SubthalamicNucleus | 10.4 | ![]() |
SuperiorCervicalGanglion | 20.35 | ![]() |
TemporalLobe | 13.45 | ![]() |
Testis | 34.5 | ![]() |
TestisGermCell | 20.7 | ![]() |
TestisIntersitial | 20.9 | ![]() |
TestisLeydigCell | 39.65 | ![]() |
TestisSeminiferousTubule | 28.65 | ![]() |
Thalamus | 14.05 | ![]() |
Thymus | 16.5 | ![]() |
Thyroid | 30.2 | ![]() |
Tongue | 15.75 | ![]() |
Tonsil | 20.1 | ![]() |
Trachea | 18.45 | ![]() |
TrigeminalGanglion | 32.1 | ![]() |
Uterus | 15.15 | ![]() |
UterusCorpus | 28.55 | ![]() |
WholeBlood | 17.45 | ![]() |
Wholebrain | 13.45 | ![]() |
colon | 15.3 | ![]() |
pineal_day | 13.46 | ![]() |
pineal_night | 13.7 | ![]() |
retina | 21.7 | ![]() |
small_intestine | 16.15 | ![]() |
- Probe name: A_24_P89426
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 4.01 ± 0.54 | ![]() ![]() ![]() |
Basal Forebrain | 3.76 ± 0.35 | ![]() ![]() ![]() |
Basal Part of Pons | 3.66 ± 0.56 | ![]() ![]() ![]() |
Cerebellar Cortex | 3.39 ± 0.48 | ![]() ![]() ![]() |
Cerebellar Nuclei | 3.67 ± 0.56 | ![]() ![]() ![]() |
Claustrum | 3.14 ± 0.59 | ![]() ![]() ![]() |
Epithalamus | 4.82 ± 0.59 | ![]() ![]() ![]() |
Frontal Lobe | 3.75 ± 0.49 | ![]() ![]() ![]() |
Globus Pallidus | 5 ± 0.32 | ![]() ![]() ![]() |
Hypothalamus | 3.87 ± 0.61 | ![]() ![]() ![]() |
Insula | 3.9 ± 0.31 | ![]() ![]() ![]() |
Limbic Lobe | 3.64 ± 0.59 | ![]() ![]() ![]() |
Mesencephalon | 3.95 ± 0.59 | ![]() ![]() ![]() |
Myelencephalon | 3.81 ± 0.56 | ![]() ![]() ![]() |
Occipital Lobe | 3.48 ± 0.52 | ![]() ![]() ![]() |
Parietal Lobe | 3.75 ± 0.52 | ![]() ![]() ![]() |
Pontine Tegmentum | 3.77 ± 0.59 | ![]() ![]() ![]() |
Striatum | 4.35 ± 0.47 | ![]() ![]() ![]() |
Subthalamus | 3.87 ± 0.23 | ![]() ![]() ![]() |
Temporal Lobe | 3.74 ± 0.53 | ![]() ![]() ![]() |
Thalamus | 3.88 ± 0.46 | ![]() ![]() ![]() |
White Matter | 4.58 ± 0.51 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Apom | CB | Cerebellum | 5.8 | ![]() |
5.75 | ![]() | |||
Apom | CTX | Cerebral cortex | 13.67 | ![]() |
8.91 | ![]() | |||
Apom | HIP | Hippocampal region | 9.83 | ![]() |
8.2 | ![]() | |||
Apom | HPF | Hippocampal formation | 9.05 | ![]() |
7.02 | ![]() | |||
Apom | HY | Hypothalamus | 4.76 | ![]() |
3.66 | ![]() | |||
Apom | LSX | Lateral septal complex | 5.54 | ![]() |
4.88 | ![]() | |||
Apom | MB | Midbrain | 4.73 | ![]() |
4.24 | ![]() | |||
Apom | MY | Medulla | 13.75 | ![]() |
14.66 | ![]() | |||
Apom | OLF | Olfactory bulb | 36.78 | ![]() |
25.65 | ![]() | |||
Apom | P | Pons | 11.86 | ![]() |
13.06 | ![]() | |||
Apom | PAL | Pallidum | 6.29 | ![]() |
4.86 | ![]() | |||
Apom | RHP | Retrohippocampal region | 7.58 | ![]() |
5.29 | ![]() | |||
Apom | sAMY | Striatum-like amygdalar nuclei | 2.69 | ![]() |
1.74 | ![]() | |||
Apom | STR | Striatum | 6.77 | ![]() |
4.47 | ![]() | |||
Apom | STRd | Striatum dorsal region | 5.31 | ![]() |
3.44 | ![]() | |||
Apom | STRv | Striatum ventral region | 15.15 | ![]() |
9.04 | ![]() | |||
Apom | TH | Thalamus | 10.96 | ![]() |
8.08 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00026334 | 14 | 99 | 112 | KWIYHLTEGSTDLR | Peptide Atlas |